CX675394

Overview
NameCX675394
Unique NameCX675394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11227 contig Csv1_Contig11227:197..917. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675394 vs. ExPASy Swiss-Prot
Match: ARPC3_MOUSE (Actin-related protein 2/3 complex subunit 3 OS=Mus musculus GN=Arpc3 PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 2.635e-39
Identity = 82/170 (48.24%), Postives = 115/170 (67.65%), Query Frame = -1
Query:  146 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRHEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 649
            YHSS +D +  TK  G   LLPL+S  KGPAP   +D TDIVDEAI +F+ANVFF+N++IK+ AD+ LIY+T YI+  LK+ +   + ++G K +  LG+   P+PGEP FP   ++A P S++E E+ R YL+Q+R+ET  RL    + P +  P+KWW  F KR+FMN
Sbjct:    4 YHSSLMDPD--TKLIGNMALLPLRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPASKQEDEMMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWTCFVKRQFMN 170          
BLAST of CX675394 vs. ExPASy Swiss-Prot
Match: ARPC3_HUMAN (Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 3.441e-39
Identity = 81/170 (47.65%), Postives = 115/170 (67.65%), Query Frame = -1
Query:  146 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRHEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 649
            YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++IK+ AD+ LIY+T YI+  LK+ +   + ++G K +  LG+   P+PGEP FP   ++A P +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F KR+FMN
Sbjct:    4 YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170          
BLAST of CX675394 vs. ExPASy Swiss-Prot
Match: ARPC3_BOVIN (Actin-related protein 2/3 complex subunit 3 OS=Bos taurus GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 3.441e-39
Identity = 81/170 (47.65%), Postives = 115/170 (67.65%), Query Frame = -1
Query:  146 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRHEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 649
            YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++IK+ AD+ LIY+T YI+  LK+ +   + ++G K +  LG+   P+PGEP FP   ++A P +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F KR+FMN
Sbjct:    4 YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170          
BLAST of CX675394 vs. ExPASy Swiss-Prot
Match: ARPC3_SCHPO (Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces pombe GN=arc3 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.072e-32
Identity = 74/169 (43.79%), Postives = 100/169 (59.17%), Query Frame = -1
Query:  146 YHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRHEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAY-RPNGTPNKWWLAFAKRKFMN 649
            YHSSF+    V       +LPLK+  +GPA  +D+ + DI+DE I  FRAN FFRNF+IK  AD+ LIY T +I+  L R  G     +  + + +L LE   +PG   FP   L+A P S ++AE+ R YL Q R+E + RLLS  Y      P+KWW  F+KR+FMN
Sbjct:    4 YHSSFLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNFEIKGPADRTLIYGTLFISECLGRVNG-LNYRDAERQLNSLALENFSIPGSAGFPLNALYAPPLSPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMN 171          
BLAST of CX675394 vs. ExPASy Swiss-Prot
Match: ARPC3_DICDI (Actin-related protein 2/3 complex subunit 3 OS=Dictyostelium discoideum GN=arcC PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.829e-32
Identity = 72/172 (41.86%), Postives = 101/172 (58.72%), Query Frame = -1
Query:  146 MVYHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRHEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPN-GTPNKWWLAFAKRKFMN 655
            MVYHS F DE    +  G  P+LPLK+  KGPAP  D +  DI+DEA+  F+AN+ FRNF+++ + D++LIYLT YI   L +       A+  KA+  +  E+  +PGE  FP  GL  +P ++  A+  R Y  Q+R E   RL    Y  +    NKWW+ F+KRKF+N
Sbjct:    1 MVYHSQFNDESAGFRLVGNVPILPLKTTHKGPAPKGDANSVDIIDEALDLFKANILFRNFEVQGNGDRVLIYLTLYITKCLLK-IAPMNKADAEKALFLIAQEQFSIPGESAFPLGGLVTVPNTRDAADTLRQYFTQLRLELGVRLCQRVYAVDPSKANKWWICFSKRKFLN 171          
BLAST of CX675394 vs. ExPASy Swiss-Prot
Match: ARPC3_CAEEL (Probable actin-related protein 2/3 complex subunit 3 OS=Caenorhabditis elegans GN=arx-5 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.321e-32
Identity = 72/172 (41.86%), Postives = 106/172 (61.63%), Query Frame = -1
Query:  146 YHSSFVDEEGVTKACGCPL--LPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRHEGRRTLAEGTKAIINLGLEK-VPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAY-RPNGTPNKWWLAFAKRKFMN 649
            YHS F  E  V       +  LP++++ KGPAP ++QD  DI+DEA+T+F+ N+FFR F+IK  AD+ +IYL FYI   L++ +       G K +  L L   +P+PGE  FP   ++  PQS+ + +  R YL+QIR+E   RL  +A+  P   P+KWWL FA+R+FM+
Sbjct:    4 YHSKFDTELKVLPLGNTNMGKLPIRTNFKGPAPQTNQD--DIIDEALTYFKPNIFFREFEIKGPADRTMIYLIFYITECLRKLQKSPNKIAGQKDLHALALSHLLPIPGENGFPLNSMYKAPQSKPDEDEMRAYLQQIRQEIGARLCDLAFPDPQDRPSKWWLCFARRRFMD 173          
BLAST of CX675394 vs. ExPASy Swiss-Prot
Match: ARPC3_YEAST (Actin-related protein 2/3 complex subunit 3 OS=Saccharomyces cerevisiae GN=ARC18 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.356e-27
Identity = 67/173 (38.73%), Postives = 100/173 (57.80%), Query Frame = -1
Query:  146 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRHEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP-QSQKEAELFRNYLKQIREETSGRLLSVAYRPNGT---PNKWWLAFAKRKFMN 649
            YHS+F  +    +  G   LLPL +  +GPA  S+ D  DI+DE +  FRAN FF+NF+IKS AD++LIY   +IN  L   +   +  E  K + N+ L+   +PG P FP   ++ +P Q     +L + Y++Q R+E + RLL   Y    +   P+K+WLAF +R+FMN
Sbjct:    4 YHSTFPVDPNTDRMVGNFALLPLNTKFRGPAYPSNSDY-DIIDECLDLFRANSFFKNFEIKSPADRVLIYGILFINDCLAHLKITTSFNEAVKVLTNVALDNFTLPGTPGFPLNNVYQVPVQDHNSMDLLKTYIQQFRQELAMRLLERVYSSTDSKEYPSKFWLAFTRRRFMN 175          
BLAST of CX675394 vs. ExPASy Swiss-Prot
Match: ARPC3_ENTHI (Probable actin-related protein 2/3 complex subunit 3 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 48/121 (39.67%), Postives = 67/121 (55.37%), Query Frame = -1
Query:  305 REMVYHSSFVDEEGVTKACGCPLLPLKSHIK-GPAPASDQDRTDIVDEAITFFRANVFFRNFDIK-SSADKLLIYLTFYINVALKRHEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGL 661
            R   YHS  +D++ V KA   PL+  K+ +K  P      D  DIVDEAIT+++ANVF++N D+    ADKLL YL FY+   L    G RT  +  K   +L +E   +PG+  F   G+
Sbjct:    5 RSGAYHSE-LDKDIVQKAGNFPLMQFKTKVKVNPKFLLKGDDMDIVDEAITYYKANVFYKNLDMSICEADKLLAYLMFYLQSLLLTFTG-RTKVDCDKMAFSLAIENFGLPGDGKFCLGGI 123          
The following BLAST results are available for this feature:
BLAST of CX675394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ARPC3_MOUSE2.635e-3948.24Actin-related protein 2/3 complex subunit 3 OS=Mus... [more]
ARPC3_HUMAN3.441e-3947.65Actin-related protein 2/3 complex subunit 3 OS=Hom... [more]
ARPC3_BOVIN3.441e-3947.65Actin-related protein 2/3 complex subunit 3 OS=Bos... [more]
ARPC3_SCHPO1.072e-3243.79Actin-related protein 2/3 complex subunit 3 OS=Sch... [more]
ARPC3_DICDI1.829e-3241.86Actin-related protein 2/3 complex subunit 3 OS=Dic... [more]
ARPC3_CAEEL5.321e-3241.86Probable actin-related protein 2/3 complex subunit... [more]
ARPC3_YEAST1.356e-2738.73Actin-related protein 2/3 complex subunit 3 OS=Sac... [more]
ARPC3_ENTHI4.236e-1339.67Probable actin-related protein 2/3 complex subunit... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_62A02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A02-B4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675394 ID=CX675394; Name=CX675394; organism=Citrus sinensis; type=EST; length=721bp
TTTTTTTTTTTTTTTTGAATAAGCCTCAAGTCAAATTTTTATTACTGTCA
ATGAAAAGGAATCATATTTTTTAGAGCATATATAAGAATTTCAGAAGCTA
CAAGTTGGATGGGTGCACAACAAACTGTATTCAAGGAACAATGATGTTCA
TGAATTTCCTCTTGGCAAATGCCAACCACCATTTATTTGGTGTGCCGTTA
GGTCTATATGCAACACTCAACAGTCTCCCACTTGTTTCCTCTCTTATCTG
CTTCAGATAATTCCTGAATAGCTCTGCTTCCTTTTGAGATTGAGGAAGAG
CAAAGAGACCTGGAAAAGGAAAATTAGGCTCTCCTGGCACAGGAACCTTT
TCCAAGCCCAAGTTAATGATTGCCTTGGTTCCCTCAGCCAAAGTTCTACG
ACCCTCATGTCTTTTCAAAGCCACATTTATGTAGAATGTCAAATATATTA
GCAGCTTATCAGCCGAGCTCTTAATATCAAAGTTTCTAAAGAACACATTG
GCCCTGAAGAACGTGATTGCCTCATCAACAATATCAGTTCTATCTTGATC
AGAAGCAGGGGCAGGACCCTTTATATGGCTTTTTAAAGGAAGTAAAGGGC
AACCACAAGCTTTAGTAACTCCTTCCTCATCAACGAAACTCGAATGATAA
ACCATTTCTCGATGACTGGAGCTAACAAGAATCTGTTTTCGCCCCAATTT
GCAAAACCCTAAGTTTCCTGC
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