CK937893

Overview
NameCK937893
Unique NameCK937893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4174 contig Csv1_Contig4174:51..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK937893 vs. ExPASy Swiss-Prot
Match: AIR12_ARATH (Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 2.164e-37
Identity = 92/187 (49.20%), Postives = 123/187 (65.78%), Query Frame = 1 
Query:   43 IVLGLSLWFLLISPALSL-TCTSQSKNLKNEIYAHCLDLPSLSSFLHFTYDASNRSLSIAFVAAPAKS-GGWIAWAINPTAPGMAGSQALVAYKDSKGAV-TVKLYNVSSYASIVPTKKLSFDVWDTSADE-SGGLMRIYGKVKVPEELAKAGKLNQVWQVGPSVTPGGMIAKHDFAPPNLNSKGAL 591
            ++L ++ +  LISPA+S   C SQ+ N     +  C DLP L+S+LH+TY++SN SLS+AFVA P+++ GGW+AWAINPT   MAGSQA +AY+   GA   VK YN+SSY+S+V   KL+FD W+  A+  SGG + I+  VKVP   A A  +NQVWQ+G +VT  G    H F P NL S   L
Sbjct:    9 LILAVACFVSLISPAISQQACKSQNLNSAGP-FDSCEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPVVKTYNISSYSSLV-EGKLAFDFWNLRAESLSGGRIAIFTTVKVP---AGADSVNQVWQIGGNVT-NGRPGVHPFGPDNLGSHRVL 189
The following BLAST results are available for this feature:
BLAST of CK937893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AIR12_ARATH2.164e-3749.20Auxin-induced in root cultures protein 12 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004480_F04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937893 ID=CK937893; Name=CK937893; organism=Citrus sinensis; type=EST; length=780bp
GGGGAATCTCTGCTCATGGCTTCCTCTTCCTCAACACGTTCGATAGTTCT
GGGGCTTTCGCTCTGGTTTCTGTTAATCTCACCCGCGCTGTCACTCACAT
GCACCTCACAGTCGAAGAATCTCAAAAACGAAATCTACGCCCACTGCCTC
GACCTCCCCTCTCTCTCCTCCTTCCTCCACTTCACCTACGACGCCTCCAA
CAGATCCCTCTCCATCGCATTCGTCGCCGCCCCTGCGAAATCCGGAGGCT
GGATCGCGTGGGCCATAAACCCGACGGCCCCGGGCATGGCGGGGTCCCAG
GCGCTGGTCGCGTACAAGGACTCCAAGGGGGCCGTGACCGTTAAGCTGTA
CAACGTCAGCAGTTACGCATCCATCGTCCCGACGAAGAAGCTGTCGTTCG
ATGTGTGGGACACCAGCGCCGACGAGTCCGGTGGGTTGATGAGGATTTAC
GGGAAGGTTAAGGTGCCGGAGGAGCTTGCGAAGGCGGGAAAGCTTAACCA
GGTCTGGCAGGTGGGGCCCAGTGTAACGCCCGGTGGGATGATAGCTAAGC
ATGATTTCGCGCCACCGAATTTGAACTCTAAGGGGGCTCTGGATTTGAGT
GGGGCCCAGACCGGCGGGGGTAGTACCGGAACCGATTCCAGGACTAAGAA
GAGAAACATTCATGGGGTATTGAATGCTGTGAGTTGGGGAATTTTTGTTC
CCAATTGGAGCCATTATTGCCCGGTACTTGAGAACTTTCGAGTCTGCAGA
TCCGGCATGGTTTTATCTCCATGTACTCTG
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