CK937889

Overview
NameCK937889
Unique NameCK937889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937889 vs. ExPASy Swiss-Prot
Match: CCSA_CITSI (Cytochrome c biogenesis protein ccsA OS=Citrus sinensis GN=ccsA PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.281e-71
Identity = 137/148 (92.57%), Postives = 137/148 (92.57%), Query Frame = -1
Query:    3 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYA 446
            MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYE           IHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYA
Sbjct:    1 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYESLIFLSWSLSIIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYA 148          
BLAST of CK937889 vs. ExPASy Swiss-Prot
Match: CCSA_VITVI (Cytochrome c biogenesis protein ccsA OS=Vitis vinifera GN=ccsA PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 5.408e-54
Identity = 109/148 (73.65%), Postives = 119/148 (80.41%), Query Frame = -1
Query:    3 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYA 446
            MIFSTLE ILTHISFSVVSI ITI+LIT LVDEI GL  SSE+GM AT FC+TGLL+TRW+Y  HFPLSDLYE           IH +  FK ++NHLSA+TAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMMVLGYA
Sbjct:    1 MIFSTLEHILTHISFSVVSIVITIHLITLLVDEIVGLSDSSEKGMIATFFCITGLLVTRWIYLGHFPLSDLYESLIFLSWSFSIIHIVPYFKKHKNHLSALTAPSAIFTQGFATSGLLTEMHQSEILVPALQSQWLMMHVSMMVLGYA 148          
BLAST of CK937889 vs. ExPASy Swiss-Prot
Match: CCSA_EUCGG (Cytochrome c biogenesis protein ccsA OS=Eucalyptus globulus subsp. globulus GN=ccsA PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.573e-53
Identity = 104/148 (70.27%), Postives = 119/148 (80.41%), Query Frame = -1
Query:    3 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYA 446
            MIFSTLE ILTHISFS++SI ITI+LI+  VDEI GLY SSE+GMTAT FC+TGLL+TRW+YS HFPLSDLYE           IH +  FK ++N+LS ITAPS  FTQGFATSG LT+MHQS I+VPALQ QWLMMHVSMM+LGYA
Sbjct:    1 MIFSTLEHILTHISFSIISIVITIFLISLSVDEIVGLYDSSEKGMTATFFCITGLLVTRWIYSGHFPLSDLYESLIFLSWSFSVIHMVPYFKKHKNYLSTITAPSTIFTQGFATSGLLTEMHQSEIVVPALQSQWLMMHVSMMILGYA 148          
BLAST of CK937889 vs. ExPASy Swiss-Prot
Match: CCSA_PLAOC (Cytochrome c biogenesis protein ccsA OS=Platanus occidentalis GN=ccsA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.740e-52
Identity = 104/148 (70.27%), Postives = 116/148 (78.38%), Query Frame = -1
Query:    3 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYA 446
            MIF TLE I THISFS+VSI ITI+L+T LVD I GLY SSE+GM AT  C+TG L+TRW+YSRHFPLSDLYE           IH +   +N++NHLSAITAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMMVL YA
Sbjct:    1 MIFLTLEHIFTHISFSIVSIVITIHLMTLLVDGIVGLYDSSEKGMIATFLCITGFLVTRWIYSRHFPLSDLYESLIFLSWSFSIIHMVPKIRNHKNHLSAITAPSAIFTQGFATSGLLTEMHQSAILVPALQSQWLMMHVSMMVLSYA 148          
BLAST of CK937889 vs. ExPASy Swiss-Prot
Match: CCSA_CALFG (Cytochrome c biogenesis protein ccsA OS=Calycanthus floridus var. glaucus GN=ccsA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 5.062e-52
Identity = 103/148 (69.59%), Postives = 118/148 (79.73%), Query Frame = -1
Query:    3 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYA 446
            MIFSTLE ILTHISFS++SI ITI+L+  LV +  GL  SSE+GM AT FC+TGLL+TRW+YSRHFPLSDLYE           IH +  F+N++N LSAITAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMM+LGYA
Sbjct:    1 MIFSTLEHILTHISFSIISIVITIHLLNLLVHDTVGLCDSSEKGMMATFFCITGLLVTRWIYSRHFPLSDLYESLMFLSWSFSIIHMVPYFRNHKNSLSAITAPSAIFTQGFATSGLLTEMHQSAILVPALQSQWLMMHVSMMLLGYA 148          
BLAST of CK937889 vs. ExPASy Swiss-Prot
Match: CCSA_GOSHI (Cytochrome c biogenesis protein ccsA OS=Gossypium hirsutum GN=ccsA PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.473e-51
Identity = 107/152 (70.39%), Postives = 117/152 (76.97%), Query Frame = -1
Query:    3 MIFSTLERILTHISFSVVSIGITIYLITF--LVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKI--FDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYA 446
            MIFSTLE ILTHISFSVVSI ITI+ +T   LVDE+ GLY SSE+GM  T FC+TGLL+TRW+YS HFPLSDLYE           IH +    FK  +N+LSAITAPSA FTQGFATSG LTKMHQS IL PALQ QWLMMHVSMMVLGYA
Sbjct:    1 MIFSTLEHILTHISFSVVSIVITIHFLTLFLLVDEVVGLYDSSEKGMIVTFFCITGLLVTRWIYSGHFPLSDLYESLIFLSWGFSLIHMVSYLKFKKRKNNLSAITAPSAIFTQGFATSGLLTKMHQSAILAPALQSQWLMMHVSMMVLGYA 152          
BLAST of CK937889 vs. ExPASy Swiss-Prot
Match: CCSA_BUXMI (Cytochrome c biogenesis protein ccsA OS=Buxus microphylla GN=ccsA PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.281e-51
Identity = 103/147 (70.07%), Postives = 115/147 (78.23%), Query Frame = -1
Query:    6 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGY 446
            MIF TLE ILTHISFS+VSI ITI+LIT LVDEI GLY S E+GM +T  C+TGLL+TRW+YS H PLS+LYE           IH I  FKN++NHLS +TAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMMVL Y
Sbjct:    1 MIFLTLEHILTHISFSIVSIVITIHLITLLVDEIVGLYDSLEKGMISTFLCITGLLVTRWIYSGHLPLSNLYESLIFLSWSFSIIHMIPYFKNHKNHLSLVTAPSAIFTQGFATSGLLTEMHQSAILVPALQSQWLMMHVSMMVLSY 147          
BLAST of CK937889 vs. ExPASy Swiss-Prot
Match: CCSA_GOSBA (Cytochrome c biogenesis protein ccsA OS=Gossypium barbadense GN=ccsA PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 5.596e-51
Identity = 106/152 (69.74%), Postives = 116/152 (76.32%), Query Frame = -1
Query:    3 MIFSTLERILTHISFSVVSIGITIYLITF--LVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKI--FDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYA 446
            MIFSTLE ILTHISFSVVSI ITI+ +T   LVDE+ GLY SSE+GM  T FC+TGLL+TRW+YS HFPLSDLYE           IH +    FK  +N+LSAITAP A FTQGFATSG LTKMHQS IL PALQ QWLMMHVSMMVLGYA
Sbjct:    1 MIFSTLEHILTHISFSVVSIVITIHFLTLFLLVDEVVGLYDSSEKGMIVTFFCITGLLVTRWIYSGHFPLSDLYESLIFLSWGFSLIHMVSYLKFKKRKNNLSAITAPRAIFTQGFATSGLLTKMHQSAILAPALQSQWLMMHVSMMVLGYA 152          
BLAST of CK937889 vs. ExPASy Swiss-Prot
Match: CCSA_MORIN (Cytochrome c biogenesis protein ccsA OS=Morus indica GN=ccsA PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 7.309e-51
Identity = 104/148 (70.27%), Postives = 115/148 (77.70%), Query Frame = -1
Query:    3 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYA 446
            MIFSTLE ILTHISFSVVSI ITI+LIT LVDEI GLY S E+GM  T FC+TGLL+TRW+Y R+ PLS+LYE           IH +  FK  +N+L AITAPSA FTQGFATSG LT+MHQS ILVPALQ  WLMMHVSMMVLGYA
Sbjct:    1 MIFSTLEHILTHISFSVVSIVITIHLITLLVDEIIGLYDSLEKGMMTTFFCITGLLMTRWIYLRYLPLSNLYESLIFLSWSFSIIHMVPYFKKYKNYLKAITAPSAIFTQGFATSGLLTEMHQSEILVPALQSHWLMMHVSMMVLGYA 148          
BLAST of CK937889 vs. ExPASy Swiss-Prot
Match: CCSA_MANES (Cytochrome c biogenesis protein ccsA OS=Manihot esculenta GN=ccsA PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 7.309e-51
Identity = 103/148 (69.59%), Postives = 113/148 (76.35%), Query Frame = -1
Query:    3 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYA 446
            MIFSTLE ILTHISFSVVSI ITI+LIT L DE   LY SSE+GM  T FC+TGLL+TRW++  H PLSDLYE           IH +  FK ++N LSAITAPS FFTQGFATSG LT MHQS ILVPALQ QWLMMHVSMM+LGYA
Sbjct:    1 MIFSTLEHILTHISFSVVSIVITIHLITLLADEFVELYDSSEKGMITTFFCITGLLVTRWIFLGHLPLSDLYESLIFLSWSFSIIHMVPYFKKHKNFLSAITAPSTFFTQGFATSGLLTDMHQSEILVPALQSQWLMMHVSMMILGYA 148          
The following BLAST results are available for this feature:
BLAST of CK937889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
CCSA_CITSI1.281e-7192.57Cytochrome c biogenesis protein ccsA OS=Citrus sin... [more]
CCSA_VITVI5.408e-5473.65Cytochrome c biogenesis protein ccsA OS=Vitis vini... [more]
CCSA_EUCGG1.573e-5370.27Cytochrome c biogenesis protein ccsA OS=Eucalyptus... [more]
CCSA_PLAOC1.740e-5270.27Cytochrome c biogenesis protein ccsA OS=Platanus o... [more]
CCSA_CALFG5.062e-5269.59Cytochrome c biogenesis protein ccsA OS=Calycanthu... [more]
CCSA_GOSHI1.473e-5170.39Cytochrome c biogenesis protein ccsA OS=Gossypium ... [more]
CCSA_BUXMI3.281e-5170.07Cytochrome c biogenesis protein ccsA OS=Buxus micr... [more]
CCSA_GOSBA5.596e-5169.74Cytochrome c biogenesis protein ccsA OS=Gossypium ... [more]
CCSA_MORIN7.309e-5170.27Cytochrome c biogenesis protein ccsA OS=Morus indi... [more]
CCSA_MANES7.309e-5169.59Cytochrome c biogenesis protein ccsA OS=Manihot es... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004480_E12 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937889 ID=CK937889; Name=CK937889; organism=Citrus sinensis; type=EST; length=461bp
GGGGCATAGCCCAATACCATCATACTTACGTGCATCATTAACCACTGGAC
TTGGAGAGCGGGTACTAATATTCTGGATTGATGCATTTTGGTTAAAAAAC
CCGAAGTCGCAAAGCCTTGGGTAAAAAAAGCACTTGGTGCCGTTATAGCG
CTTAAATGATTTTGATTATTTTTAAAATCAAAAATCTTATGAATAATAGA
TAAACTCCATGAAAGAAAGATTAATGATTCATATAAATCACTTAATGGGA
AATGTCTCGAGTAAACCCAACGGGTGATTAATAATCCTGTTAGACAGAAA
GCGGTAGCTGTCATCCCCCTTTCTGATGAAGCATATAGCCCTCTGATTTC
ATCGACTAAGAAGGTTATTAAATAAATTGTAATTCCAATTGAAACGACCG
AAAAGGATATATGCGTTAATATACGCTCCAAAGTTGAAAATATCATAAAA
AAAAAAAAAAA
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