CK937885

Overview
NameCK937885
Unique NameCK937885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10786 contig Csv1_Contig10786:441..1118. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK937885 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 57/232 (24.57%), Postives = 102/232 (43.97%), Query Frame = 3 
Query:   24 SGMLSNKQXFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFP----VGTKVKCFADAGYFINAKDVSGASHIEQF-YAQVVATHGSAKH----LPASCTSRLSPG---LCFFPQYMARQITTPLFIINAAYDSWQ--IKNILAPGVADPHGTWHSCKLDINNCSPTQLQTMQSFRTQFLNA 677
            +G+LS++   NP ++N N + + YC    ++G     +  N   F G+ + Q V+ +L+ KG+  A+  +L+G SAGG   +L+ D    L         +V+  AD+G+F++ K    +  I+    A   A     ++    +P  C  +   G    CFF   +   +  P+F++   +D  Q  + N+   G     G W    L I N       T++  +  F  A
Sbjct:  166 TGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLDNKQYRRSDCIDTINCAPTDAIRRGIRYWSGMVPERCQRQFKEGEEWNCFFGYKVYPTLRCPVFVVQWLFDEAQLTVDNVHLTGQPVQEGQW----LYIQNLGRELRGTLKDVQASFAPA 392
The following BLAST results are available for this feature:
BLAST of CK937885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NOTUM_MOUSE2.709e-1124.57Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004480_G06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937885 ID=CK937885; Name=CK937885; organism=Citrus sinensis; type=EST; length=678bp
GGGTGGTCAAGGTACCTGCATTCTCTGGGATGCTGAGCAACAAGCAANNN
TTTAACCCAGACTTCTACAATTGGAATAGAATCAAGGTTAGATACTGTGA
TGGGGCATCGTTTACTGGAGATGTGGAGGCTGTCAATCCAGCAAATAACC
TTCACTTCAGAGGAGCAAGGGTTTTTCAAGCTGTCATGGAGGATCTAATG
GCTAAAGGGATGAAAAATGCTCAAAATGCTGTTCTTTCTGGCTGCTCAGC
TGGGGGATTGACTTCAATTTTGCATTGTGATAACTTCCGAGCTCTCTTCC
CTGTGGGTACTAAAGTAAAATGCTTTGCAGATGCTGGTTATTTTATCAAC
GCGAAGGATGTTTCTGGAGCAAGTCACATTGAGCAGTTTTATGCTCAAGT
GGTCGCAACACATGGATCAGCTAAGCATTTGCCAGCATCCTGCACTTCAA
GATTGAGCCCAGGACTGTGTTTCTTCCCACAATACATGGCACGGCAAATA
ACAACACCGCTATTTATCATAAATGCGGCCTATGATTCATGGCAGATAAA
GAACATTTTGGCACCAGGTGTTGCTGATCCACATGGAACTTGGCATAGCT
GCAAGCTTGATATAAACAACTGCTCACCTACTCAGCTGCAAACAATGCAA
AGTTTCAGGACACAATTCTTAAATGCAT
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