CK937878

Overview
NameCK937878
Unique NameCK937878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig999 contig Csv1_Contig999:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI1_TOBAC (Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.107e-78
Identity = 143/162 (88.27%), Postives = 155/162 (95.68%), Query Frame = 3
Query:  282 RGFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            RGFSS S++P ++  LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLG
Sbjct:   44 RGFSSNSVSPAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLMRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDISLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLG 205          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI3_TOBAC (Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.467e-78
Identity = 145/171 (84.80%), Postives = 157/171 (91.81%), Query Frame = 3
Query:  255 LGPQFQLPCRGFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            L  QF    RGFSS S++P ++  LV  +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTEEDI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLG
Sbjct:   45 LASQFLDQFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLG 215          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI5_TOBAC (Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 5.496e-78
Identity = 144/171 (84.21%), Postives = 157/171 (91.81%), Query Frame = 3
Query:  255 LGPQFQLPCRGFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            L  QF    RGFSS S++P ++  LV  +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRT+EDI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLG
Sbjct:   45 LASQFLDQFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTDEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLG 215          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI2_TOBAC (Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.728e-77
Identity = 141/162 (87.04%), Postives = 154/162 (95.06%), Query Frame = 3
Query:  282 RGFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            RGFSS S++  ++  LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DI LANSVDLGSLRDPQQDAERVK+PEWLVV+GVCTHLG
Sbjct:   58 RGFSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLG 219          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_SOLTU (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum GN=FES1 PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 7.936e-77
Identity = 141/162 (87.04%), Postives = 154/162 (95.06%), Query Frame = 3
Query:  282 RGFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            RGFSS S++P ++  LV  +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYAS +RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPGSTVTVKWRGKPVFIRRRT++DIKLANSVDLG+LRDPQQDAERVKNPEWLVVVGVCTHLG
Sbjct:   51 RGFSSNSVSPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASSVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTDDDIKLANSVDLGTLRDPQQDAERVKNPEWLVVVGVCTHLG 212          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI4_TOBAC (Cytochrome b-c1 complex subunit Rieske-4, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.036e-76
Identity = 140/161 (86.96%), Postives = 153/161 (95.03%), Query Frame = 3
Query:  285 GFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            GFSS S++  ++  LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DI LANSVDLGSLRDPQQDAERVK+PEWLVV+GVCTHLG
Sbjct:   23 GFSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLG 183          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_MAIZE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Zea mays PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.355e-75
Identity = 137/168 (81.55%), Postives = 156/168 (92.86%), Query Frame = 3
Query:  267 FQLPCRGFSS-ESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            F +  RGFSS E++ PRN+++ +  +PATVAAVKNP  K+VYDEYNHERYPPGDPSKRAFAYFVL+GGRF+YASL+RLL+LKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DIKLANSVD+ SLR P+QDAERVKNPEWLVV+GVCTHLG
Sbjct:   53 FFVASRGFSSTETVVPRNQDAGLADLPATVAAVKNPNPKVVYDEYNHERYPPGDPSKRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDVASLRHPEQDAERVKNPEWLVVIGVCTHLG 220          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_NEUCR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Neurospora crassa GN=NCU06606 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.897e-28
Identity = 60/109 (55.05%), Postives = 82/109 (75.23%), Query Frame = 3
Query:  441 FAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            F+YF++     + A+  +  I +F+ +MSAS DVLAMA +EVDL++I  G  V +KWRGKPVFIR RT  +I+ AN V++ +LRDP+ DA+RVK PEWLV++GVCTHLG
Sbjct:   70 FSYFMVGTMGAITAAGAKSTIQEFLKNMSASADVLAMAKVEVDLNAIPEGKNVIIKWRGKPVFIRHRTPAEIEEANKVNVATLRDPETDADRVKKPEWLVMLGVCTHLG 178          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_YEAST (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saccharomyces cerevisiae GN=RIP1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.518e-27
Identity = 56/111 (50.45%), Postives = 85/111 (76.58%), Query Frame = 3
Query:  435 RAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            R++AYF++     + ++  +  +  F+ SM+A+ DVLAMA +EV+L++I  G  V VKW+GKPVFIR RT  +I+ ANSVD+ +L+DPQ DA+RVK+P+WL+++G+CTHLG
Sbjct:   53 RSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLG 163          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_SCHPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Schizosaccharomyces pombe GN=rip1 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 62/116 (53.45%), Postives = 82/116 (70.69%), Query Frame = 3
Query:  420 GDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            GD S R  +Y ++     + A+  +  +  F+ S SAS DVLAM+  EVDLS I  G  + VKW+GKPVFIR RT E+I+ ANSVD+ +LRDPQ D++RV+ PEWLV++GVCTHLG
Sbjct:   62 GDRS-RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKNLVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLG 176          
The following BLAST results are available for this feature:
BLAST of CK937878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
UCRI1_TOBAC1.107e-7888.27Cytochrome b-c1 complex subunit Rieske-1, mitochon... [more]
UCRI3_TOBAC2.467e-7884.80Cytochrome b-c1 complex subunit Rieske-3, mitochon... [more]
UCRI5_TOBAC5.496e-7884.21Cytochrome b-c1 complex subunit Rieske-5, mitochon... [more]
UCRI2_TOBAC2.728e-7787.04Cytochrome b-c1 complex subunit Rieske-2, mitochon... [more]
UCRI_SOLTU7.936e-7787.04Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI4_TOBAC1.036e-7686.96Cytochrome b-c1 complex subunit Rieske-4, mitochon... [more]
UCRI_MAIZE4.355e-7581.55Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_NEUCR8.897e-2855.05Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_YEAST1.518e-2750.45Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SCHPO9.837e-2753.45Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004480_H10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937878 ID=CK937878; Name=CK937878; organism=Citrus sinensis; type=EST; length=768bp
GCGGGGGCTGTTTCACCCATTTTCCCAAAATNNNGCGAAAAGCGAGAGNN
NNATAACACCAATCGCCATTTCGAAGAGATAATCAGAGAGAGATTTTGAA
GATGTTGAGGGTCGCGGCGAGAAGGCTCTTATCACCATCCTCATCATCGT
CATTGAGGCCCATCGCATCGTCTCGGAATATAATTAACGGCGCCGGTTCA
TCGTCCTCCTCCAACGATGATTTCAGATCCAACGGCTTCTATGGCTCCGG
ATATCTTGGACCTCAGTTTCAACTTCCTTGCCGAGGTTTTTCTTCTGAGT
CACTGACACCAAGAAATGAAGAAAGCCTGGTTCCAGGTGTTCCAGCAACA
GTGGCAGCTGTTAAGAATCCCACTTCTAAGATAGTATATGATGAATACAA
TCATGAACGTTATCCTCCAGGTGACCCCAGCAAGCGGGCATTTGCCTACT
TTGTCCTGACTGGTGGTAGGTTTGTGTATGCTTCACTCATCCGTCTACTT
ATCCTTAAATTTGTACTGAGCATGTCAGCGAGTAAGGATGTTCTTGCTAT
GGCCTCTCTTGAGGTTGATCTGTCCAGCATTGAGCCAGGCAGCACAGTGA
CTGTTAAGTGGCGGGGCAAGCCAGTTTTCATCAGACGTCGGACTGAGGAA
GATATCAAGCTGGCCAACAGTGTTGATTTGGGATCTCTTCGTGATCCTCA
GCAAGACGCTGAGAGGGTTAAAAACCCGGAGTGGCTTGTAGTTGTTGGGG
TCTGCACACATCTTGGTT
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