CK937871

Overview
NameCK937871
Unique NameCK937871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8093 contig Csv1_Contig8093:10..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: TDT_ARATH (Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2)

HSP 1 Score: 285.034 bits (728), Expect = 2.200e-76
Identity = 145/200 (72.50%), Postives = 162/200 (81.00%), Query Frame = 3
Query:   60 MNGDHEAHPNSGDIKAPLLP---SHRQIQRSPSSHFTLKTIFTPNNFYILLGPLLCAVICVCVKLDGQ--ATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            MNG       S D+K+PLLP   +    +R       L+TIFTP N YI LGPLLCAV+C+CV L G    T+RNMLGVL W+FAWWLTEAVPMPITSM PLFLFPLFGIS+AD VA+SYMDDVI+LVLGSFILALAVEHYNIH+RLALNIT++FC EP+N PLLLLGIC TTAFVSMWMHNVAAAV+MMPVATGILQ L
Sbjct:    1 MNGGDVTVAGSDDLKSPLLPVVHNDEPFERQTVGQ-QLRTIFTPKNCYIALGPLLCAVVCLCVDLGGDETTTARNMLGVLVWMFAWWLTEAVPMPITSMTPLFLFPLFGISAADDVANSYMDDVISLVLGSFILALAVEHYNIHRRLALNITLVFCVEPLNAPLLLLGICATTAFVSMWMHNVAAAVMMMPVATGILQRL 199          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: S13A2_RABIT (Solute carrier family 13 member 2 OS=Oryctolagus cuniculus GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.161e-23
Identity = 50/115 (43.48%), Postives = 76/115 (66.09%), Query Frame = 3
Query:  300 WWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            +W T+A+P+ +T++ PL LFP+ GI  A  V   Y+ D   L +G  +LA+AVEH+N+HKR+AL + +L     + P LL+LG    TAF+SMW+ N A+  +M+P+A  +LQ L
Sbjct:   48 FWCTDALPLAVTALLPLCLFPMMGIMEASEVGLEYLKDTNVLFIGGLLLAIAVEHWNLHKRIALRVLLL---TGVRPALLILGFMVVTAFLSMWISNTASTAMMVPIAHAVLQEL 159          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: S13A2_MOUSE (Solute carrier family 13 member 2 OS=Mus musculus GN=Slc13a2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.322e-22
Identity = 48/114 (42.11%), Postives = 72/114 (63.16%), Query Frame = 3
Query:  303 WLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            W TEA+P+ +T++ P+ LFPL GI  A  V   Y  D   L +G  ++A+AVEH+N+HKR+AL + ++     + P LLLLG    TAF+SMW+ N A   +M+P+   +L+ L
Sbjct:   49 WCTEALPLAVTALFPIILFPLMGIMEASKVCLEYFKDTNILFVGGLMVAIAVEHWNLHKRIALGVLLII---GVRPALLLLGFMLVTAFLSMWISNTATTAMMLPIGYAVLEQL 159          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: S13A5_HUMAN (Solute carrier family 13 member 5 OS=Homo sapiens GN=SLC13A5 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.548e-21
Identity = 52/122 (42.62%), Postives = 75/122 (61.48%), Query Frame = 3
Query:  279 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            V+  +  +W TE +P+ +TS+ P+ LFPLF I  +  V   YM D   L LG  I+A+AVE +N+HKR+AL  T+L+ G    P  L+LG  G TA +SMW+ N A   +M+P+   ILQ +
Sbjct:   41 VIILMAIYWCTEVIPLAVTSLMPVLLFPLFQILDSRQVCVQYMKDTNMLFLGGLIVAVAVERWNLHKRIALR-TLLWVG--AKPARLMLGFMGVTALLSMWISNTATTAMMVPIVEAILQQM 159          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: S13A2_HUMAN (Solute carrier family 13 member 2 OS=Homo sapiens GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.548e-21
Identity = 48/115 (41.74%), Postives = 74/115 (64.35%), Query Frame = 3
Query:  300 WWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            +W TEA+P+ +T++ PL LFP+ GI  A  VA  Y+ D   L  G  ++A+AVEH+N+HKR+AL + ++     + P  L+LG    TAF+SMW+ N A + +M+P+A  +L  L
Sbjct:   48 FWCTEALPLAVTALFPLILFPMMGIVDASEVAVEYLKDSNLLFFGGLLVAIAVEHWNLHKRIALRVLLIV---GVRPAPLILGFMLVTAFLSMWISNTATSAMMVPIAHAVLDQL 159          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: SDCS_STAS1 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sdcS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 53/149 (35.57%), Postives = 88/149 (59.06%), Query Frame = 3
Query:  195 ILLGPLLCAVICVCVKLDGQATSRN-MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ 638
            ++LGPLL  +  +  + D  +     +L +  W+  WW+TEA+P+  TS+ PL L P+  + + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I         +   +LLG    T F+SM++ N AA +IM+P+   I++
Sbjct:   35 LILGPLLFVLTLLLFQPDNLSDKGVFVLAITLWIATWWITEAIPIAATSLLPLILLPVGHVLNPEEVSAQYGNDIIFLFLGGFILAIAMERWNLHTRVALRIINTL---GTSTGRILLGFMIATGFLSMFVSNTAAVMIMIPIGLAIIK 180          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: SDCS_STAAW (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MW2) GN=sdcS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  270 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ 638
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIK 181          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: SDCS_STAAS (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MSSA476) GN=sdcS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  270 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ 638
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIK 181          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: SDCS_STAAR (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MRSA252) GN=sdcS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  270 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ 638
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIK 181          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: SDCS_STAAN (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain N315) GN=sdcS PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  270 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ 638
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIK 181          
The following BLAST results are available for this feature:
BLAST of CK937871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
TDT_ARATH2.200e-7672.50Tonoplast dicarboxylate transporter OS=Arabidopsis... [more]
S13A2_RABIT2.161e-2343.48Solute carrier family 13 member 2 OS=Oryctolagus c... [more]
S13A2_MOUSE5.322e-2242.11Solute carrier family 13 member 2 OS=Mus musculus ... [more]
S13A5_HUMAN1.548e-2142.62Solute carrier family 13 member 5 OS=Homo sapiens ... [more]
S13A2_HUMAN1.548e-2141.74Solute carrier family 13 member 2 OS=Homo sapiens ... [more]
SDCS_STAS15.884e-2135.57Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAW5.884e-2139.84Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAS5.884e-2139.84Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAR5.884e-2139.84Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAN5.884e-2139.84Sodium-dependent dicarboxylate transporter sdcS OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004480_H03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937871 ID=CK937871; Name=CK937871; organism=Citrus sinensis; type=EST; length=645bp
GGGGACTTTCGAACCATCCTTCAATTTTCTCTCGTATCGTGTTACCCGTT
CACTGCAAAATGAACGGTGACCACGAAGCTCATCCAAATTCTGGTGACAT
CAAGGCGCCACTCCTACCTTCCCATCGTCAAATCCAACGGTCACCAAGCT
CCCACTTCACATTGAAAACCATTTTCACACCAAACAATTTCTACATCCTC
CTAGGACCTCTCCTGTGCGCTGTTATATGTGTATGTGTGAAGCTCGATGG
GCAGGCGACAAGCAGGAACATGTTGGGTGTTCTTGCTTGGGTCTTCGCTT
GGTGGCTCACGGAGGCCGTACCCATGCCCATTACCTCTATGGCGCCTCTG
TTTCTGTTTCCTCTGTTTGGTATCTCTTCTGCTGACACCGTTGCTCATTC
TTACATGGATGATGTTATTGCCCTCGTTCTTGGTAGCTTTATTCTTGCTC
TTGCCGTTGAGCACTACAACATTCACAAAAGATTGGCCTTAAATATAACT
ATTCTATTCTGTGGAGAGCCAATGAATCCGCCCTTGCTGCTTCTTGGGAT
ATGTGGCACGACAGCATTCGTGAGCATGTGGATGCATAACGTGGCAGCAG
CAGTGATCATGATGCCAGTGGCCACTGGGATCTTACAGAACTTGC
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