CK937869

Overview
NameCK937869
Unique NameCK937869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length305
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937869 vs. ExPASy Swiss-Prot
Match: RR18_CITSI (30S ribosomal protein S18, chloroplastic OS=Citrus sinensis GN=rps18 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.344e-25
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 2
Query:    5 QGKILSRRVNRLTLKEQRLITIAIKQARILSLLPFLNNEKQFERSGLTARPPGLRTRKK 181
            QGKILSRRVNRLTLKEQRLITIAIKQARILS LPFLNNEKQFERSGLTARPPGLRTRKK
Sbjct:   43 QGKILSRRVNRLTLKEQRLITIAIKQARILSSLPFLNNEKQFERSGLTARPPGLRTRKK 101          
BLAST of CK937869 vs. ExPASy Swiss-Prot
Match: RR18_COFAR (30S ribosomal protein S18, chloroplastic OS=Coffea arabica GN=rps18 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.985e-21
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 2
Query:    5 QGKILSRRVNRLTLKEQRLITIAIKQARILSLLPFLNNEKQFERSGLTARPPGLRTRKK 181
            QGKILSRRVNRLTLK+QRLIT+AIKQARILSLLPFLNNEKQFER+  TAR  GLRTR K
Sbjct:   43 QGKILSRRVNRLTLKQQRLITVAIKQARILSLLPFLNNEKQFERTESTARTTGLRTRNK 101          
BLAST of CK937869 vs. ExPASy Swiss-Prot
Match: RR18_PANGI (30S ribosomal protein S18, chloroplastic OS=Panax ginseng GN=rps18 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.362e-20
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 2
Query:    5 QGKILSRRVNRLTLKEQRLITIAIKQARILSLLPFLNNEKQFERSGLTARPPGLRTRKK 181
            QGKILSRRVNRLTLK+QRLITIAIKQARILSLLPFLNN+KQFER+  TAR  GLR RKK
Sbjct:   43 QGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNDKQFERTESTARTAGLRARKK 101          
BLAST of CK937869 vs. ExPASy Swiss-Prot
Match: RR18_LACSA (30S ribosomal protein S18, chloroplastic OS=Lactuca sativa GN=rps18 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.323e-20
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 2
Query:    5 QGKILSRRVNRLTLKEQRLITIAIKQARILSLLPFLNNEKQFERSGLTARPPGLRTRKK 181
            QGKILSRRVNRLTLK+QRLITIAIKQARILSLLPFLNNEKQFER+  T R P LR RK+
Sbjct:   43 QGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERTESTTRTPSLRARKR 101          
BLAST of CK937869 vs. ExPASy Swiss-Prot
Match: RR18_HELAN (30S ribosomal protein S18, chloroplastic OS=Helianthus annuus GN=rps18 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.323e-20
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 2
Query:    5 QGKILSRRVNRLTLKEQRLITIAIKQARILSLLPFLNNEKQFERSGLTARPPGLRTRKK 181
            QGKILSRRVNRLTLK+QRLITIAIKQARILSLLPFLNNEKQFER+  T R P LR RK+
Sbjct:   43 QGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERTESTTRTPSLRARKR 101          
BLAST of CK937869 vs. ExPASy Swiss-Prot
Match: RR18_GUIAB (30S ribosomal protein S18, chloroplastic OS=Guizotia abyssinica GN=rps18 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.323e-20
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 2
Query:    5 QGKILSRRVNRLTLKEQRLITIAIKQARILSLLPFLNNEKQFERSGLTARPPGLRTRKK 181
            QGKILSRRVNRLTLK+QRLITIAIKQARILSLLPFLNNEKQFER+  T R P LR RK+
Sbjct:   43 QGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERTESTTRTPSLRARKR 101          
BLAST of CK937869 vs. ExPASy Swiss-Prot
Match: RR18_VITVI (30S ribosomal protein S18, chloroplastic OS=Vitis vinifera GN=rps18 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.034e-20
Identity = 51/59 (86.44%), Postives = 53/59 (89.83%), Query Frame = 2
Query:    5 QGKILSRRVNRLTLKEQRLITIAIKQARILSLLPFLNNEKQFERSGLTARPPGLRTRKK 181
            QGKILSRRVNRLTLK+QRLITIAIKQARILS LPFLNNEKQFER+  TAR  GLRTR K
Sbjct:   43 QGKILSRRVNRLTLKQQRLITIAIKQARILSSLPFLNNEKQFERTESTARTTGLRTRNK 101          
BLAST of CK937869 vs. ExPASy Swiss-Prot
Match: RR18_POPTR (30S ribosomal protein S18, chloroplastic OS=Populus trichocarpa GN=rps18 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.034e-20
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 2
Query:    5 QGKILSRRVNRLTLKEQRLITIAIKQARILSLLPFLNNEKQFERSGLTARPPGLRTRKK 181
            QGKILSRRVNRLTLK+QRLITIAIKQARILS LPFLNNE+QFE++ L AR  GLRTRKK
Sbjct:   43 QGKILSRRVNRLTLKQQRLITIAIKQARILSSLPFLNNERQFEKNELVARTTGLRTRKK 101          
BLAST of CK937869 vs. ExPASy Swiss-Prot
Match: RR18_POPAL (30S ribosomal protein S18, chloroplastic OS=Populus alba GN=rps18 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.034e-20
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 2
Query:    5 QGKILSRRVNRLTLKEQRLITIAIKQARILSLLPFLNNEKQFERSGLTARPPGLRTRKK 181
            QGKILSRRVNRLTLK+QRLITIAIKQARILS LPFLNNE+QFE++ L AR  GLRTRKK
Sbjct:   43 QGKILSRRVNRLTLKQQRLITIAIKQARILSSLPFLNNERQFEKNELVARTTGLRTRKK 101          
BLAST of CK937869 vs. ExPASy Swiss-Prot
Match: RR18_GOSBA (30S ribosomal protein S18, chloroplastic OS=Gossypium barbadense GN=rps18 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.963e-20
Identity = 51/59 (86.44%), Postives = 52/59 (88.14%), Query Frame = 2
Query:    5 QGKILSRRVNRLTLKEQRLITIAIKQARILSLLPFLNNEKQFERSGLTARPPGLRTRKK 181
            QGKILSRRVNRLTLK+QRLITIAIKQARILSLLPFLNNEKQFERS  T R   LRTR K
Sbjct:   43 QGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERSESTTRTTALRTRNK 101          
The following BLAST results are available for this feature:
BLAST of CK937869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RR18_CITSI5.344e-2598.3130S ribosomal protein S18, chloroplastic OS=Citrus... [more]
RR18_COFAR7.985e-2186.4430S ribosomal protein S18, chloroplastic OS=Coffea... [more]
RR18_PANGI1.362e-2086.4430S ribosomal protein S18, chloroplastic OS=Panax ... [more]
RR18_LACSA2.323e-2084.7530S ribosomal protein S18, chloroplastic OS=Lactuc... [more]
RR18_HELAN2.323e-2084.7530S ribosomal protein S18, chloroplastic OS=Helian... [more]
RR18_GUIAB2.323e-2084.7530S ribosomal protein S18, chloroplastic OS=Guizot... [more]
RR18_VITVI3.034e-2086.4430S ribosomal protein S18, chloroplastic OS=Vitis ... [more]
RR18_POPTR3.034e-2084.7530S ribosomal protein S18, chloroplastic OS=Populu... [more]
RR18_POPAL3.034e-2084.7530S ribosomal protein S18, chloroplastic OS=Populu... [more]
RR18_GOSBA3.963e-2086.4430S ribosomal protein S18, chloroplastic OS=Gossyp... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004480_G12 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937869 ID=CK937869; Name=CK937869; organism=Citrus sinensis; type=EST; length=305bp
GGGACAAGGAAAAATATTATCTAGACGGGTGAATAGATTGACCTTAAAAG
AACAACGATTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTG
TTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGTGGGTTGACCGC
TAGACCTCCCGGTCTTAGAACCAGAAAAAAATAGGCTTACTCTTCAATTA
AATAAAAATTCCAATCTGAACTCAAACACAGATGGATGTTTTGTTCAAAA
AATCTGTGAAGCAGCCGTGCCGTAAGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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