CK937868
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 6.390e-57 Identity = 106/143 (74.13%), Postives = 124/143 (86.71%), Query Frame = 2 Query: 68 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQA 496 MATVPGQLIWEIVK+NNCFLVKQFGRGNA V+FSKE NNL N+NS+KH+GLAN+KTVTIQ GKD VVL T KTK+QNKP ++KS ++KEF RM+K V NQV DNYYRPDLKKAALARLSA+++ L+V+KSG K+RNRQA Sbjct: 1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKRRNRQA 143
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 1.090e-56 Identity = 106/143 (74.13%), Postives = 125/143 (87.41%), Query Frame = 2 Query: 68 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQA 496 MATVPGQLIWEIVK NNCFLVKQFGRGN+ V+FSKE NNL N++S+KH+GLAN+KTVTIQ KD +VVLAT KTKKQNKP ++KS ++KEFPRM+K V NQV DNYYRPDLKKAALARLSA+++ L+V+KSG K+RNRQA Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3) HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15 Identity = 48/138 (34.78%), Postives = 76/138 (55.07%), Query Frame = 2 Query: 89 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 502 L W +V+ + FL+K+ + +S EPNNL NSF++ GL +RKTV ++P VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVM--VKRKRTRPTK 135
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15 Identity = 48/138 (34.78%), Postives = 76/138 (55.07%), Query Frame = 2 Query: 89 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 502 L W +V+ + FL+K+ + +S EPNNL NSF++ GL +RKTV ++P VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28_SPOFR (60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15 Identity = 54/133 (40.60%), Postives = 75/133 (56.39%), Query Frame = 2 Query: 89 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTI--QPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKTVVNQV----ADNYYRPDLKKAALARLSAVNRSLKVSKS 469 L W I++ NN FLVK + N FSKEPNN+ NLNS+++ GL +K V + P K +VV K K NKPA K+ +R++F A+ + +V N+YR DL KA L R SA+ RS + K+ Sbjct: 5 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVY--KKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRSQRPIKA 128
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3) HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15 Identity = 48/138 (34.78%), Postives = 76/138 (55.07%), Query Frame = 2 Query: 89 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 502 L W +V+ + FL+K+ + +S EPNNL NSF++ GL +RKTV ++P VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVM--VKRKPSRPTK 135
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28_RAT (60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4) HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13 Identity = 47/138 (34.06%), Postives = 75/138 (54.35%), Query Frame = 2 Query: 89 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 502 L W +V+ + FL+K+ + +S EPNNL NSF++ GL +RKTV ++ VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28_DROME (60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12 Identity = 52/151 (34.44%), Postives = 78/151 (51.66%), Query Frame = 2 Query: 68 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFP----RMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATKVP 508 MAT L W I++ NN FL+K + + FS EPNNL +++S++++G+ ++KT+ + P K K +PA K+T+R +F R K + N + + YR DL +AAL R SAV RS K + KK K P Sbjct: 1 MAT-SSHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPA----KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKP 143
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28E_SCHPO (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe GN=rpl28e PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12 Identity = 43/135 (31.85%), Postives = 70/135 (51.85%), Query Frame = 2 Query: 74 TVPGQLIWEIVKKNNCFLVK--QFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMA-KTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKS 469 +V LIW++++ NN FLVK +FG ++F++EP N+ N+ + +GL N K V +Q V++ K KPA L K + R K++ ++ YR DL K ++AR SA+ S + K+ Sbjct: 2 SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKKT 132
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28_DICDI (60S ribosomal protein L28 OS=Dictyostelium discoideum GN=rpl28 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11 Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 2 Query: 89 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQP-GGKDLSVVLATAKTKKQNKPASLLHKSTM----RKEFPRMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQ 493 L+W I+KKNN FL G + S EP NL N NS K++GLA R T+ + GK VV+++ KK PA +T ++ R KT+ Q Y P+L+ AAL RL V +L+ +K ++ ++ Sbjct: 5 LVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK---VVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLATQ-----YAPELRAAALGRLHRVQSALRSAKKAAARKAKK 131 The following BLAST results are available for this feature:
BLAST of CK937868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK937868 ID=CK937868; Name=CK937868; organism=Citrus sinensis; type=EST; length=730bpback to top |