CK937868

Overview
NameCK937868
Unique NameCK937868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig646 contig Csv1_Contig646:141..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.390e-57
Identity = 106/143 (74.13%), Postives = 124/143 (86.71%), Query Frame = 2
Query:   68 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQA 496
            MATVPGQLIWEIVK+NNCFLVKQFGRGNA V+FSKE NNL N+NS+KH+GLAN+KTVTIQ  GKD  VVL T KTK+QNKP   ++KS ++KEF RM+K V NQV DNYYRPDLKKAALARLSA+++ L+V+KSG K+RNRQA
Sbjct:    1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKRRNRQA 143          
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.090e-56
Identity = 106/143 (74.13%), Postives = 125/143 (87.41%), Query Frame = 2
Query:   68 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQA 496
            MATVPGQLIWEIVK NNCFLVKQFGRGN+ V+FSKE NNL N++S+KH+GLAN+KTVTIQ   KD +VVLAT KTKKQNKP   ++KS ++KEFPRM+K V NQV DNYYRPDLKKAALARLSA+++ L+V+KSG K+RNRQA
Sbjct:    1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143          
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 48/138 (34.78%), Postives = 76/138 (55.07%), Query Frame = 2
Query:   89 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 502
            L W +V+  + FL+K+  +      +S EPNNL   NSF++ GL +RKTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVM--VKRKRTRPTK 135          
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 48/138 (34.78%), Postives = 76/138 (55.07%), Query Frame = 2
Query:   89 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 502
            L W +V+  + FL+K+  +      +S EPNNL   NSF++ GL +RKTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135          
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28_SPOFR (60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 54/133 (40.60%), Postives = 75/133 (56.39%), Query Frame = 2
Query:   89 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTI--QPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKTVVNQV----ADNYYRPDLKKAALARLSAVNRSLKVSKS 469
            L W I++ NN FLVK   + N    FSKEPNN+ NLNS+++ GL  +K V +   P  K  +VV    K K  NKPA    K+ +R++F   A+  + +V      N+YR DL KA L R SA+ RS +  K+
Sbjct:    5 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVY--KKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRSQRPIKA 128          
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 48/138 (34.78%), Postives = 76/138 (55.07%), Query Frame = 2
Query:   89 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 502
            L W +V+  + FL+K+  +      +S EPNNL   NSF++ GL +RKTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVM--VKRKPSRPTK 135          
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28_RAT (60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 47/138 (34.06%), Postives = 75/138 (54.35%), Query Frame = 2
Query:   89 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATK 502
            L W +V+  + FL+K+  +      +S EPNNL   NSF++ GL +RKTV ++       VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135          
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28_DROME (60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 52/151 (34.44%), Postives = 78/151 (51.66%), Query Frame = 2
Query:   68 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFP----RMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQATKVP 508
            MAT    L W I++ NN FL+K   + +    FS EPNNL +++S++++G+ ++KT+ + P            K K   +PA    K+T+R +F     R  K + N +  + YR DL +AAL R SAV RS K +    KK      K P
Sbjct:    1 MAT-SSHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPA----KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKP 143          
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28E_SCHPO (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe GN=rpl28e PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 43/135 (31.85%), Postives = 70/135 (51.85%), Query Frame = 2
Query:   74 TVPGQLIWEIVKKNNCFLVK--QFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMA-KTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKS 469
            +V   LIW++++ NN FLVK  +FG     ++F++EP N+   N+ + +GL N K V +Q       V++     K   KPA L  K  +     R   K++  ++    YR DL K ++AR SA+  S +  K+
Sbjct:    2 SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKKT 132          
BLAST of CK937868 vs. ExPASy Swiss-Prot
Match: RL28_DICDI (60S ribosomal protein L28 OS=Dictyostelium discoideum GN=rpl28 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 2
Query:   89 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHTGLANRKTVTIQP-GGKDLSVVLATAKTKKQNKPASLLHKSTM----RKEFPRMAKTVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVKKRNRQ 493
            L+W I+KKNN FL    G     +  S EP NL N NS K++GLA R T+ +    GK   VV+++   KK   PA     +T      ++  R  KT+  Q     Y P+L+ AAL RL  V  +L+ +K    ++ ++
Sbjct:    5 LVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK---VVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLATQ-----YAPELRAAALGRLHRVQSALRSAKKAAARKAKK 131          
The following BLAST results are available for this feature:
BLAST of CK937868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RL282_ARATH6.390e-5774.1360S ribosomal protein L28-2 OS=Arabidopsis thalian... [more]
RL281_ARATH1.090e-5674.1360S ribosomal protein L28-1 OS=Arabidopsis thalian... [more]
RL28_HUMAN4.633e-1534.7860S ribosomal protein L28 OS=Homo sapiens GN=RPL28... [more]
RL28_MOUSE6.051e-1534.7860S ribosomal protein L28 OS=Mus musculus GN=Rpl28... [more]
RL28_SPOFR7.903e-1540.6060S ribosomal protein L28 OS=Spodoptera frugiperda... [more]
RL28_BOVIN7.903e-1534.7860S ribosomal protein L28 OS=Bos taurus GN=RPL28 P... [more]
RL28_RAT1.490e-1334.0660S ribosomal protein L28 OS=Rattus norvegicus GN=... [more]
RL28_DROME1.262e-1234.4460S ribosomal protein L28 OS=Drosophila melanogast... [more]
RL28E_SCHPO2.811e-1231.85Probable 60S ribosomal protein L28e OS=Schizosacch... [more]
RL28_DICDI2.379e-1134.2960S ribosomal protein L28 OS=Dictyostelium discoid... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004480_G10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937868 ID=CK937868; Name=CK937868; organism=Citrus sinensis; type=EST; length=730bp
GGGGAGCCCTAAACCCTGTTGCTCTTAGCATTCGAAGTGAGTCGGAGTGA
AAAAAAGGCAGAAAGAAATGGCGACGGTTCCAGGACAGTTGATTTGGGAG
ATCGTGAAGAAGAACAACTGCTTCTTGGTTAAACAATTCGGCAGAGGCAA
CGCCAGCGTCGAGTTCAGCAAGGAACCCAACAACCTCTACAACCTTAACT
CCTTCAAACACACCGGTTTGGCGAATCGGAAGACTGTGACCATTCAGCCT
GGAGGCAAGGACCTGTCTGTGGTGTTGGCCACTGCAAAGACCAAGAAGCA
GAACAAGCCTGCCAGCTTGCTTCACAAATCCACCATGAGGAAGGAGTTCC
CAAGAATGGCTAAGACTGTTGTCAATCAGGTTGCTGATAACTACTACAGG
CCAGACTTGAAGAAGGCAGCCCTTGCAAGGCTTAGTGCTGTTAACAGGAG
CCTAAAGGTCTCAAAATCTGGTGTCAAAAAGAGAAACAGGCAGGCTACGA
AGGTTCCCGTTAGGAAGTGAACTTTAGGAGGAATCGAGTGATGTTATGCT
TTGTTCTTGGAATGGTTTTATTTTAGTTCTTATAAGTATCAAGAAGACAG
TTTTCATTTATGTTTAATTTTTGATGTACTGGAGATATTAGCCCGTTCCA
CCCCACTGGGAAAAGGGTCAAAATTTAGATTTTAACTTGATTTTGTTTTT
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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