CK937846

Overview
NameCK937846
Unique NameCK937846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4590 contig Csv1_Contig4590:13..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937846 vs. ExPASy Swiss-Prot
Match: UMP3_ARATH (Uncharacterized protein At5g10860, mitochondrial OS=Arabidopsis thaliana GN=At5g10860 PE=1 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 3.586e-91
Identity = 170/206 (82.52%), Postives = 188/206 (91.26%), Query Frame = 2
Query:   89 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST-VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQGGY 700
            MQG I+SF+S GN+VK +VLQ +R++NP ++P V  SR ES   ARMEE GFESTTISD++K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITERDYLRKIIVQGRSSKST VGDIMTEENKLITV+P+TKVLRAMQLMTDNRIRHIPVI DKGMIGMVSIGDVVRAVV EHREEL RLNA+IQGGY
Sbjct:    1 MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDVMKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVSIGDVVRAVVHEHREELQRLNAYIQGGY 206          
BLAST of CK937846 vs. ExPASy Swiss-Prot
Match: YHCV_BACSU (CBS domain-containing protein yhcV OS=Bacillus subtilis GN=yhcV PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.299e-13
Identity = 37/105 (35.24%), Postives = 67/105 (63.81%), Query Frame = 2
Query:  317 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDV 631
            + T+ +A   M QHNVGA+ VV+ G  K   G++T+RD   +   QGR  ++ V ++M+ E  L++ +P+  +  A QLM  ++IR +P++D   ++G+V++GD+
Sbjct:   18 NQTIQEAASLMKQHNVGAIPVVEQGVLK---GMLTDRDIALRTTAQGRDGQTPVSEVMSTE--LVSGNPNMSLEDASQLMAQHQIRRLPIVDQNNLVGIVALGDL 117          
BLAST of CK937846 vs. ExPASy Swiss-Prot
Match: YBP3_ACIAM (Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.122e-13
Identity = 46/125 (36.80%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  323 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSEHREELNRLNAFIQG 694
            T+ +A K M +HN+G+LVV+    Q  V GIITERD ++      R   S V   MT++ K +T   DT+V  A+ +M +N  RH+P+I   G + G+VSI D+ RA++  H  +  +    ++G
Sbjct:   21 TIAEAAKEMKEHNLGSLVVID--SQNRVVGIITERDIVKA--ASNRDIDSPVEKYMTKDVKGVT--EDTEVTDALDIMLNNGFRHLPIIKSNGKLYGIVSIRDLARALLDVHTMQFGKPAEEVKG 139          
BLAST of CK937846 vs. ExPASy Swiss-Prot
Match: Y525_METKA (Uncharacterized protein MK0525 OS=Methanopyrus kandleri GN=MK0525 PE=4 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.946e-12
Identity = 45/140 (32.14%), Postives = 78/140 (55.71%), Query Frame = 2
Query:  320 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTVG-DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA-------------VVSEHREELNRLNAFIQG 694
            +T  +    M +H +G++V+V   E+    GIITERD + K++ QG++    +  DIM++   +ITV  D +V  A++LM D  IR +P++DD G +IG+V++ D+++                 E  EEL  ++  I+G
Sbjct:   21 ETAVEIAYKMREHGIGSVVIVN--EKDEPIGIITERDLVIKVVSQGKNPDEVIARDIMSQP--VITVEEDMEVNEAVKLMVDKGIRRLPIVDDNGKLIGIVTMQDILQVEPYLVATIEEEMKKFQEELEELEEVSEIIEG 156          
BLAST of CK937846 vs. ExPASy Swiss-Prot
Match: Y653_METJA (Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii GN=MJ0653 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 35/112 (31.25%), Postives = 67/112 (59.82%), Query Frame = 2
Query:  311 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTVGDIMTEE---NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 637
            T + ++YD    MT++N+GA+V+V   E     GI+TERD +++++ +    K    D++ EE    K+IT+  +  +  A ++M  + I+ +PV+ D  ++G+V+  D+VR
Sbjct:   21 TKNMSIYDIANIMTENNIGAVVIV---ENNKPIGIVTERDIVKRVVSKNLKPK----DVLAEEVMSKKIITIPQNASITEAAKIMATHGIKRLPVVKDGELVGIVTQSDIVR 125          
BLAST of CK937846 vs. ExPASy Swiss-Prot
Match: YLBB_BACSU (Uncharacterized protein ylbB OS=Bacillus subtilis GN=ylbB PE=4 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 2
Query:  305 WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDV 631
            +CT  D VY+A   M   NVGA+ VV   + +++ GI+T+RD + + I   + +   + D MTE  K ++V  D  V   + LM  +++R IPV  +K + G+V++GD+
Sbjct:   14 YCTVLDNVYEAAVKMKDANVGAIPVVDE-DGETLVGIVTDRDLVLRGIAIKKPNSQKITDAMTE--KPVSVEEDASVDEVLHLMASHQLRRIPVTKNKKLTGIVTLGDL 119          
The following BLAST results are available for this feature:
BLAST of CK937846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UMP3_ARATH3.586e-9182.52Uncharacterized protein At5g10860, mitochondrial O... [more]
YHCV_BACSU2.299e-1335.24CBS domain-containing protein yhcV OS=Bacillus sub... [more]
YBP3_ACIAM5.122e-1336.80Uncharacterized 17.7 kDa protein in bps2 3'region ... [more]
Y525_METKA1.946e-1232.14Uncharacterized protein MK0525 OS=Methanopyrus kan... [more]
Y653_METJA2.152e-1131.25Uncharacterized protein MJ0653 OS=Methanocaldococc... [more]
YLBB_BACSU3.670e-1134.86Uncharacterized protein ylbB OS=Bacillus subtilis ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004481_B12 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937846 ID=CK937846; Name=CK937846; organism=Citrus sinensis; type=EST; length=806bp
GGGGACAGCAGGTCTCTCAATCTTATCCCGTATCTGCTGCTTCTGCCGCC
GCCACCAGTATTGCTCTCTCACACTCACAGGAAAAAAAATGCAAGGGGCA
ATTCAATCATTTCTATCCCATGGAAATATCGTCAAATCTGCTGTTCTGCA
ACGCATCCGTTTGGTCAATCCGATGCTTAGGCCTGTAGTTTCTTCGCGGT
TCGAGTCGGTTTCATCTGCTCGTATGGAAGAGCATGGTTTCGAGAGCACA
ACAATTTCAGACATATTGAAAGCAAAAGGTAAAGGTGCGGATGGCTCTTG
GCTTTGGTGCACTACTGATGACACTGTCTATGATGCTGTCAAGTCGATGA
CACAGCATAACGTTGGAGCGTTGGTCGTCGTCAAACCCGGAGAGCAAAAG
TCTGTTGCTGGGATCATCACAGAGAGAGATTATCTCAGGAAGATCATAGT
GCAGGGAAGATCATCCAAGTCAACAGTTGGGGACATCATGACTGAAGAGA
ACAAGCTGATCACAGTCTCACCTGACACCAAAGTTCTGCGGGCAATGCAA
TTGATGACAGATAACCGTATTCGGCACATTCCAGTAATTGATGACAAGGG
AATGATAGGCATGGTGTCCATTGGAGATGTTGTTCGTGCTGTGGTGAGTG
AGCATCGTGAGGAGTTAAACCGCCTGAATGCTTTTATACAAGGAGGTTAC
TAGATGATGATGACAAGATGAAATGTTGTGATGCATGTTTTTTGAGTACT
ACTAATAAGACAGGAGGTTGTAAATATGGCGTGTTGTATGCATCTCCNNN
NNTATG
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