CK937845

Overview
NameCK937845
Unique NameCK937845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937845_ssr19 microsatellite CK937845_ssr19:19..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:111..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937845 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.158e-22
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCK*GPTCACVNCTCG 294
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CK GP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CK937845 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.678e-17
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  106 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCK*GPTCACVNCTCGS 297
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CK G  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CK937845 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.497e-17
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCK*GPTCACVNCTC 291
            MSD CGNCDCAD SQCVKKG+S   D VETD S++   VVM V AAE+ G CK G +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CK937845 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.523e-15
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCK*GPTCACVNCTC 291
            MS  C NCDC+D SQC KKG S+    VET+   + T V+MD  AAE  GNCK GP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDT-VIMDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CK937845 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.523e-15
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCK*GPTCACVNCTCG 294
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CK G  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CK937845 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.619e-14
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCK*GPTCACVNCTCG 294
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CK G +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK937845 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.619e-14
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCK*GPTCACVNCTCG 294
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CK G +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK937845 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.778e-12
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCK*GPTCACVNCTCG 294
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CK    C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CK937845 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   97 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCK*GPTCACVNCTCG 294
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CK    C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CK937845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA6.158e-2268.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC2.678e-1759.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE3.497e-1766.15Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV9.523e-1556.92Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO9.523e-1557.58Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ3.619e-1453.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI3.619e-1453.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ5.778e-1248.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI2.195e-1146.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004481_B11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937845 ID=CK937845; Name=CK937845; organism=Citrus sinensis; type=EST; length=604bp
NCGGCCGGNNNTCATCACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGA
GCCCTCTATTTCCAGTTTTAAGTTCTAAGTTCTAAGCTCAATCAACATGT
CGGACACCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAG
AAGGGAAGCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGT
CAGCACCGTTGTTGTCATGGACGTTCAGGCTGCTGAGGCTGAAGGTAACT
GCAAGTGAGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCAC
TAATAAGCAAACACATGCGGCAAAAAATAAGAAGCTGCAAGTGTGCCTAA
ATATTGTGGGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAAAGAAA
AATTCTCTACTTCGTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGAT
GTGCGTGTTGTGTCACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCA
TAATCATGTAATATATGGCCATGGCCATGACCGTGGCCTTGTGTGGTTTA
ATTTTAATGTATTATTGTTAGTCTATAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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