CK937833

Overview
NameCK937833
Unique NameCK937833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2061 contig Csv1_Contig2061:1..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK937833 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.662e-31
Identity = 79/137 (57.66%), Postives = 93/137 (67.88%), Query Frame = 3 
Query:  339 HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVM-DDEHDEGNGVGESEAMEGDAPSDPGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPITNNQNNR--GLPGTP 725
            HGSN +M + + Q  +H V +   H LHHI NG  M DD+ D+GN  G SE +E D PS PG+++DNR       SE GDQLTLSFQGQVYVFDSV PEKVQAVLLLLGGRE+P   P    + +QNNR   LPGTP
Sbjct:    5 HGSNARMHIREAQDPMH-VQF-EHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSHPGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNRVSSLPGTP 139
[Close]
BLAST of CK937833 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.615e-28
Identity = 76/136 (55.88%), Postives = 89/136 (65.44%), Query Frame = 3 
Query:  339 HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDPGSLSDNRAVS-----EIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPITNNQNNR--GLPGTP 725
            HG N +M +   Q+ +H V Y  +H LHHI N + M D+H +G   G  E +E D PS PG+ +DNR        E GDQLTLSFQGQVYVFD VSPEKVQAVLLLLGGREVP T P    + +QNNR  GL GTP
Sbjct:    5 HGRNGRMHIGVAQNPMH-VQY-EDHGLHHIDNENSMMDDHADG---GMDEGVETDIPSHPGNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTP 135
The following BLAST results are available for this feature:
BLAST of CK937833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GAT25_ARATH2.662e-3157.66GATA transcription factor 25 OS=Arabidopsis thalia... [more]
GAT27_ARATH1.615e-2855.88GATA transcription factor 27 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004481_C08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937833 ID=CK937833; Name=CK937833; organism=Citrus sinensis; type=EST; length=725bp
GCGGGGATCGTACGCACCTTCCCTTAATAATNNNACTTAAAACGGTCAAA
GACAAAATCTTGACCAAAATGAGAAATTAAACTAAACAGCTGCCTATCTC
TCGCCGCCCCCATCCAATCTCAATCATCCAAACTCTTTCTTCCTTCGCCA
GCGCTTAATCTCGGCCGTTGATATCCCAGCTTCACAGATCGCAATCCGAC
GGCCACAAATTCCTCTGTTCTGATCTCTCTTTCTCCGGCGATTTAATTCA
ACGGCGGAATTCGCTTGTTCCAGTGTAGGCTATTCCTATTCCGGTTTCGA
TTCGTCGTACACTCGAATGTGTAGAAGAGAGGATGGATCATGGGAGCAAT
CCTCAAATGCAAATGAGTGATGAGCAGCATGCAATCCATCACGTGAATTA
TGTGCCAGAGCATGAACTGCATCATATAAGCAATGGGGATGTGATGGATG
ATGAGCATGATGAGGGTAATGGTGTTGGAGAGAGTGAGGCAATGGAAGGG
GATGCACCATCTGACCCCGGGAGTCTTTCTGATAATCGCGCCGTTTCTGA
GATTGGGGACCAGCTAACACTGTCTTTCCAAGGGCAGGTTTATGTGTTTG
ACTCCGTTTCGCCCGAAAAGGTTCAAGCTGTACTATTGTTATTGGGGGGG
CGAGAAGTACCTTCAACCACACCTGCTATCCCAATAACTAATAACCAAAA
CAACCGGGGACTACCTGGTACTCCA
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