CX675376

Overview
NameCX675376
Unique NameCX675376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675376 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.313e-87
Identity = 149/225 (66.22%), Postives = 181/225 (80.44%), Query Frame = 1
Query:    4 GRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 678
            GR+G LD+A+ LI  MPM PNAIVWGALL+GCRL K T LAE VL +LIALEPWN+GNYV LSNIYS   +W++AA++R MM  KG++KI G SW+E++G VHEFL  D SHPLS+KIY+KL++L  +++  GFVPTT+ V FD+EEEEK+  L  HSEKLA+A GLI+T    VIR+ KNLRVCGDCHE +KLISKIT REI+VRDNNRFHCF  GSCSC D+W
Sbjct:  461 GRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685          
BLAST of CX675376 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.672e-68
Identity = 117/226 (51.77%), Postives = 164/226 (72.57%), Query Frame = 1
Query:    1 LGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 678
            LGR+G L++AH L+K+MP EP+A +WG LL   R+H  T+LAE   +++ A+EP NSG YVLLSN+Y++S +W D  K+R  M DKG++K+ G SW+E+    H F VGD  HP  ++I++ L+EL  ++K AG+V  T  VL D+EEEEK+  +  HSE+LA+A+G++  +    IR+ KNLRVC DCH AIK +++ITGR II+RDNNRFH F +GSCSC D+W
Sbjct:  556 LGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781          
BLAST of CX675376 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.709e-67
Identity = 120/226 (53.10%), Postives = 159/226 (70.35%), Query Frame = 1
Query:    1 LGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 678
            LG SG   EA E+I  M MEP+ ++W +LL  C++H   +L E     LI +EP N G+YVLLSNIY+++ +WN+ AK R+++ DKG++K+ GCS +E+D VVHEF++GD  HP + +IY  L+E+   L+ AGFVP T  VL ++EEE K+  L  HSEKLA+AFGLI+T P   + I KNLRVC +CHEA KLISKI  REII RD  RFH F +G CSC D+W
Sbjct:  516 LGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741          
BLAST of CX675376 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 2.915e-67
Identity = 119/226 (52.65%), Postives = 163/226 (72.12%), Query Frame = 1
Query:    1 LGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 678
            L R+GQ+ +A+E IKSMPM+PN ++W  LL  C +H  +DLAE    Q++ LEP +SG+YVLLSN+Y++  +W+D  KIR  M   G++K+ G S VEV   VHEFL+GD SHP S+ IY+KL E+  +L++ G+VP   +V  D+EEEEK+  +  HSEK+A+AF LI+T  +  I + KNLRVC DCH AIKL+SK+  REI+VRD +RFH F  GSCSC+D+W
Sbjct:  370 LARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595          
BLAST of CX675376 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.973e-67
Identity = 122/225 (54.22%), Postives = 161/225 (71.56%), Query Frame = 1
Query:    4 GRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 678
            GRSG + EA   I SMPMEP+ ++WG+LL+G R+       E  L +LI L+P NSG YVLLSN+Y+ + +W +   IR  M  KGI K+ GCS+VEV+GVVHEF+VGD S   SE+IY+ LDE+  +L+ AG+V  T  VL D+ E++K+  L+ HSEKLA+AF L+ T P   +RI KNLR+CGDCH  +K+ISK+  REI+VRD NRFH F +GSCSC+DFW
Sbjct:  349 GRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573          
BLAST of CX675376 vs. ExPASy Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.210e-66
Identity = 111/226 (49.12%), Postives = 155/226 (68.58%), Query Frame = 1
Query:    1 LGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 678
            LGR+G L+ A   I+ MP+EP A +W ALL  CR+HK T+L  +    +  L+P + G +V+L NIY++  +WNDAA++R  M + G++K   CSWVE++  +H F+  D  HP  E+I  K +E+  K+K  G+VP T HV+  ++++E++  L  HSEK+ALAF L+ T P   I I KN+RVCGDCH AIKL SK+ GREIIVRD NRFH F +G+CSCKD+W
Sbjct:  408 LGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633          
BLAST of CX675376 vs. ExPASy Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.378e-66
Identity = 122/227 (53.74%), Postives = 159/227 (70.04%), Query Frame = 1
Query:    1 LGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEE-KQYFLACHSEKLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 678
            LGRSG L++A + I++MP+ P+  VWGALL  C++H   +LAE    +L+ LEP N G +VLLSNIY+   KW + +++R  M   G++K  GCS +E+DG++HEFL GDN+HP+SEK+Y KL E+  KLK+ G+ P    VL  IEEEE K+  L  HSEKLA+ +GLI+T    VIR+ KNLRVCGDCH   KLIS++  REIIVRD  RFH F  G CSC DFW
Sbjct:  512 LGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738          
BLAST of CX675376 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.378e-66
Identity = 120/225 (53.33%), Postives = 155/225 (68.89%), Query Frame = 1
Query:    4 GRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 678
            GR+G L EA E I+ MP+EP+ + WG+LL+ CR+HK  DL +    +L+ LEP NSG Y  L+N+YSA  KW +AAKIR  M D  ++K +G SW+EV   VH F V D +HP   +IY  + ++  ++K  G+VP T  VL D+EEE K+  L  HSEKLA+AFGLI+T  K  +RI KNLRVC DCH AIK ISK+ GREIIVRD  RFH F +G CSC+D+W
Sbjct:  562 GRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786          
BLAST of CX675376 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.089e-65
Identity = 121/231 (52.38%), Postives = 159/231 (68.83%), Query Frame = 1
Query:    1 LGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKD-----VIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 678
            LGR+G++ EA+  I+ M MEPN  VWGALL  CR+H  TD+     ++L  L P  SG YVLLSNIY+ + +W +   IR++M  KG++K  G S VEV+ ++H FLVGD SHP S++IY +LD L  K+K  G+VP ++  L D+EEE+K+  LA HSEKLA+ F L+ T  ++      IRI KNLR+CGDCH A KLIS+IT REII+RD NRFH F  G CSC D+W
Sbjct:  456 LGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686          
BLAST of CX675376 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.037e-64
Identity = 119/227 (52.42%), Postives = 159/227 (70.04%), Query Frame = 1
Query:    1 LGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKA-AGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 678
            LGRSG L +A+ LIK MPMEP++ VWGALL  CR++K T L      +L  LEP +  NYV+LSNIYSAS  W DA++IR++M  KG+ +  GCS++E    +H+F+VGD SHP SEKI  KL E+  K+K+  G+   T+ VL D+ E+ K+  +  HSEK+A+AFGL+  +P + I I KNLR+CGDCHE  K IS I  R II+RD+ RFH F++GSCSC D+W
Sbjct:  382 LGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608          
The following BLAST results are available for this feature:
BLAST of CX675376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
PP219_ARATH3.313e-8766.22Putative pentatricopeptide repeat-containing prote... [more]
PP301_ARATH7.672e-6851.77Pentatricopeptide repeat-containing protein At4g02... [more]
PPR21_ARATH1.709e-6753.10Pentatricopeptide repeat-containing protein At1g08... [more]
PP330_ARATH2.915e-6752.65Pentatricopeptide repeat-containing protein At4g21... [more]
PP295_ARATH4.973e-6754.22Pentatricopeptide repeat-containing protein At3g62... [more]
PP252_ARATH4.210e-6649.12Pentatricopeptide repeat-containing protein At3g24... [more]
PP175_ARATH9.378e-6653.74Pentatricopeptide repeat-containing protein At2g29... [more]
PP168_ARATH9.378e-6653.33Pentatricopeptide repeat-containing protein At2g22... [more]
PP271_ARATH2.089e-6552.38Putative pentatricopeptide repeat-containing prote... [more]
PP411_ARATH1.037e-6452.42Pentatricopeptide repeat-containing protein At5g40... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_61G12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61G12-N23-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675376 ID=CX675376; Name=CX675376; organism=Citrus sinensis; type=EST; length=713bp
CTTGGTCGATCAGGTCAGTTAGATGAAGCCCATGAGTTGATCAAAAGTAT
GCCAATGGAGCCTAATGCCATTGTTTGGGGAGCCTTGCTGGCGGGATGTA
GATTGCACAAGAAGACTGACTTGGCTGAGCATGTACTAAACCAGTTGATT
GCATTAGAACCATGGAACTCTGGAAACTATGTTCTCCTATCAAACATATA
TTCCGCCAGTCATAAATGGAATGACGCAGCAAAAATTCGGTCAATGATGG
GTGACAAAGGGATCCAAAAGATACGCGGATGCAGCTGGGTTGAGGTAGAT
GGTGTTGTTCATGAATTCCTTGTGGGCGATAATTCCCACCCCCTATCTGA
GAAAATATATTCAAAGCTTGATGAGTTAGCAACAAAACTGAAAGCAGCTG
GTTTTGTTCCTACAACTGACCATGTGCTGTTCGATATAGAAGAGGAAGAG
AAGCAGTATTTTCTTGCTTGTCACAGTGAGAAACTGGCCCTCGCATTTGG
TCTCATCACCACTGCTCCAAAAGACGTAATTCGAATTGCAAAAAACCTTC
GAGTATGTGGTGATTGCCATGAAGCCATTAAGCTCATTTCAAAGATCACA
GGTAGAGAGATAATTGTTAGAGATAATAACCGATTCCATTGTTTTATCGA
AGGTTCATGTTCATGTAAAGATTTTTGGTGAAATCAAAGCATAGTTGATT
AAGCTAATTTTTC
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