CX675375

Overview
NameCX675375
Unique NameCX675375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675375 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.153e-54
Identity = 100/171 (58.48%), Postives = 125/171 (73.10%), Query Frame = -2
Query:   55 NFGNYVFLSNIYSPSHKGNDAAKIRSMMGDKGIQKIRGCSWVEVDGVFHEFLVGDNSPPLFEKIYSKLEELATKLKAAGFVPTTDHVFFDIEEEEKQYFFACPREKLALAFGFIPTVPKEVIGIAKNLGVCGDCQEAIKLISKIPGREIIVRDNNRFHCFMEGSCSCKDFW 567
            N GNYV LSNIYS   + ++AA++R MM  KG++KI G SW+E++G  HEFL  D S PL +KIY+KLE+L  +++  GFVPTT+ VFFD+EEEEK+       EKLA+A G I T   +VI + KNL VCGDC E +KLISKI  REI+VRDNNRFHCF  GSCSC D+W
Sbjct:  515 NAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685          
BLAST of CX675375 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.468e-43
Identity = 87/171 (50.88%), Postives = 113/171 (66.08%), Query Frame = -2
Query:   55 NFGNYVFLSNIYSPSHKGNDAAKIRSMMGDKGIQKIRGCSWVEVDGVFHEFLVGDNSPPLFEKIYSKLEELATKLKAAGFVPTTDHVFFDIEEEEKQYFFACPREKLALAFGFIPTVPKEVIGIAKNLGVCGDCQEAIKLISKIPGREIIVRDNNRFHCFMEGSCSCKDFW 567
            N G+YV LSNIY+ + + N+ AK R+++ DKG++K+ GCS +E+D V HEF++GD   P   +IY  LEE+   L+ AGFVP T  V  ++EEE K+       EKLA+AFG I T P   + I KNL VC +C EA KLISKI  REII RD  RFH F +G CSC D+W
Sbjct:  571 NPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741          
BLAST of CX675375 vs. ExPASy Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.120e-42
Identity = 80/169 (47.34%), Postives = 108/169 (63.91%), Query Frame = -2
Query:   55 GNYVFLSNIYSPSHKGNDAAKIRSMMGDKGIQKIRGCSWVEVDGVFHEFLVGDNSPPLFEKIYSKLEELATKLKAAGFVPTTDHVFFDIEEEEKQYFFACPREKLALAFGFIPTVPKEVIGIAKNLGVCGDCQEAIKLISKIPGREIIVRDNNRFHCFMEGSCSCKDFW 561
            G +V L NIY+   + NDAA++R  M + G++K   CSWVE++   H F+  D   P  E+I  K EE+  K+K  G+VP T HV   ++++E++       EK+ALAF  + T P   I I KN+ VCGDC  AIKL SK+ GREIIVRD NRFH F +G+CSCKD+W
Sbjct:  465 GPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633          
BLAST of CX675375 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.168e-42
Identity = 83/171 (48.54%), Postives = 114/171 (66.67%), Query Frame = -2
Query:   55 NFGNYVFLSNIYSPSHKGNDAAKIRSMMGDKGIQKIRGCSWVEVDGVFHEFLVGDNSPPLFEKIYSKLEELATKLKAAGFVPTTDHVFFDIEEEEKQYFFACPREKLALAFGFIPTVPKEVIGIAKNLGVCGDCQEAIKLISKIPGREIIVRDNNRFHCFMEGSCSCKDFW 567
            N G YV LSN+Y+ + +  +   IR  M  KGI K+ GCS+VEV+GV HEF+VGD S    E+IY+ L+E+  +L+ AG+V  T  V  D+ E++K+   +   EKLA+AF  + T P   + I KNL +CGDC   +K+ISK+  REI+VRD NRFH F +GSCSC+DFW
Sbjct:  403 NSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573          
BLAST of CX675375 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 3.061e-41
Identity = 81/169 (47.93%), Postives = 112/169 (66.27%), Query Frame = -2
Query:   55 GNYVFLSNIYSPSHKGNDAAKIRSMMGDKGIQKIRGCSWVEVDGVFHEFLVGDNSPPLFEKIYSKLEELATKLKAAGFVPTTDHVFFDIEEEEKQYFFACPREKLALAFGFIPTVPKEVIGIAKNLGVCGDCQEAIKLISKIPGREIIVRDNNRFHCFMEGSCSCKDFW 561
            G+YV LSN+Y+   + +D  KIR  M   G++K+ G S VEV    HEFL+GD S P  + IY+KL+E+  +L++ G+VP   +V+ D+EEEEK+       EK+A+AF  I T  +  I + KNL VC DC  AIKL+SK+  REI+VRD +RFH F  GSCSC+D+W
Sbjct:  427 GDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595          
BLAST of CX675375 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.420e-40
Identity = 83/168 (49.40%), Postives = 111/168 (66.07%), Query Frame = -2
Query:   55 YVFLSNIYSPSHKGNDAAKIRSMMGDKGIQKIRGCSWVEVDGVFHEFLVGDNSPPLFEKIYSKLEELATKLKAAGFVPTTDHVFFDIEEEEKQYFFACPREKLALAFGFIPTVPKEVIGIAKNLGVCGDCQEAIKLISKIPGREIIVRDNNRFHCF-MEGSCSCKDFW 555
            YV LSN+Y+ S    + AK+R +M ++ ++K  G SW+EV    + FL GD S PL ++IY KLE+L+T+LK  G+ P T +V  DI++E K+   A   E+LA+AFG I T     + I KNL VCGDC   IKLI+KI  REI+VRD+NRFH F  +G CSC DFW
Sbjct:  701 YVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868          
BLAST of CX675375 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.773e-40
Identity = 80/171 (46.78%), Postives = 109/171 (63.74%), Query Frame = -2
Query:   55 NFGNYVFLSNIYSPSHKGNDAAKIRSMMGDKGIQKIRGCSWVEVDGVFHEFLVGDNSPPLFEKIYSKLEELATKLKAAGFVPTTDHVFFDIEEEEKQYFFACPREKLALAFGFIPTVPKEVIGIAKNLGVCGDCQEAIKLISKIPGREIIVRDNNRFHCFMEGSCSCKDFW 567
            N G YV LSN+Y+ S +  D  K+R  M DKG++K+ G SW+E+    H F VGD   P  ++I++ LEEL  ++K AG+V  T  V  D+EEEEK+       E+LA+A+G +       I + KNL VC DC  AIK +++I GR II+RDNNRFH F +GSCSC D+W
Sbjct:  611 NSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781          
BLAST of CX675375 vs. ExPASy Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 9.847e-40
Identity = 84/172 (48.84%), Postives = 108/172 (62.79%), Query Frame = -2
Query:   55 NFGNYVFLSNIYSPSHKGNDAAKIRSMMGDKGIQKIRGCSWVEVDGVFHEFLVGDNSPPLFEKIYSKLEELATKLKAAGFVPTTDHVFFDIEEEE-KQYFFACPREKLALAFGFIPTVPKEVIGIAKNLGVCGDCQEAIKLISKIPGREIIVRDNNRFHCFMEGSCSCKDFW 567
            N G +V LSNIY+   K  + +++R  M   G++K  GCS +E+DG+ HEFL GDN+ P+ EK+Y KL E+  KLK+ G+ P    V   IEEEE K+       EKLA+ +G I T   +VI + KNL VCGDC    KLIS++  REIIVRD  RFH F  G CSC DFW
Sbjct:  567 NDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738          
BLAST of CX675375 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.865e-39
Identity = 80/171 (46.78%), Postives = 106/171 (61.99%), Query Frame = -2
Query:   55 NFGNYVFLSNIYSPSHKGNDAAKIRSMMGDKGIQKIRGCSWVEVDGVFHEFLVGDNSPPLFEKIYSKLEELATKLKAAGFVPTTDHVFFDIEEEEKQYFFACPREKLALAFGFIPTVPKEVIGIAKNLGVCGDCQEAIKLISKIPGREIIVRDNNRFHCFMEGSCSCKDFW 567
            N G Y+ LS+IY+ + +  D  ++R +M ++G+ K  G S +E++G  H FL+GD   P  EKIY  L EL  KL  AG+V  T  V  D++EEEK+       EKLA+AFG + TVP   + + KNL VC DC   IKLISKI  RE +VRD  RFH F +G CSC D+W
Sbjct:  489 NCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659          
BLAST of CX675375 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.382e-39
Identity = 79/169 (46.75%), Postives = 111/169 (65.68%), Query Frame = -2
Query:   55 GNYVFLSNIYSPSHKGNDAAKIRSMMGDKGIQKIRGCSWVEVDGVFHEFLVGDNSPPLFEKIYSKLEELATKLKAAGFVPTTDHVFFDIEEEEKQYFFACPREKLALAFGFIPTVPKEVIGIAKNLGVCGDCQEAIKLISKIPGREIIVRDNNRFHCFMEGSCSCKDFW 561
            G YV LSN+Y+     ++ +++R  M +K I+K  GCS +++DGV HEF+V D+S P  ++I S L E++ KL+ AG+ P T  V  ++EEE+K+       EK+A AFG I T P + I I KNL +C DC  +IKLISK+  R+I VRD  RFH F +GSCSC D+W
Sbjct:  478 GAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646          
The following BLAST results are available for this feature:
BLAST of CX675375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PP219_ARATH3.153e-5458.48Putative pentatricopeptide repeat-containing prote... [more]
PPR21_ARATH1.468e-4350.88Pentatricopeptide repeat-containing protein At1g08... [more]
PP252_ARATH2.120e-4247.34Pentatricopeptide repeat-containing protein At3g24... [more]
PP295_ARATH6.168e-4248.54Pentatricopeptide repeat-containing protein At3g62... [more]
PP330_ARATH3.061e-4147.93Pentatricopeptide repeat-containing protein At4g21... [more]
PP172_ARATH4.420e-4049.40Pentatricopeptide repeat-containing protein At2g27... [more]
PP301_ARATH5.773e-4046.78Pentatricopeptide repeat-containing protein At4g02... [more]
PP175_ARATH9.847e-4048.84Pentatricopeptide repeat-containing protein At2g29... [more]
PP258_ARATH2.865e-3946.78Pentatricopeptide repeat-containing protein At3g26... [more]
PP425_ARATH6.382e-3946.75Pentatricopeptide repeat-containing protein At5g48... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_61G12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61G12-N23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675375 ID=CX675375; Name=CX675375; organism=Citrus sinensis; type=EST; length=568bp
TTTTTTTTTTTTTTTTTGAAAAAAATTAACTTAATCAACTATGCTTTGAT
TTCCCCAAAAATCTTTACATGAACATGAACCTTCCATAAAACAATGGAAT
CGGTTATTATCTCTAACAATTATCTCTCTACCTGGGATCTTTGAAATGAG
CTTAATGGCTTCCTGGCAATCACCACATACTCCAAGGTTTTTTGCAATTC
CAATTACCTCTTTTGGAACAGTGGGGATGAAACCAAATGCGAGGGCCAGT
TTCTCCCTGGGACAAGCAAAAAAATACTGCTTCTCTTCCTCTTCTATATC
GAAAAACACATGGTCAGTTGTAGGAACAAAACCCGCTGCTTTCAGTTTTG
TTGCTAACTCCTCAAGCTTTGAATATATTTTCTCAAAAAGGGGGGGGGAA
TTATCCCCCACAAGGAATTCATGAAAAACACCATCTACCTCAACCCAGCT
GCATCCCCGTATCTTTTGGATCCCTTTGTCACCCATCATTGACCGAATTT
TTGCTGCGTCATTCCCTTTATGACTGGGGGAATATATGTTTGAAAGGAAA
ACATAATTTCCAAAATTC
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