CK937792

Overview
NameCK937792
Unique NameCK937792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK937792 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 3 
Query:   48 LPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 188
            +P  KKDDQK VDA LIK+IEAVP+LKTYL ARFSLK GMKPHELVF
Sbjct:  187 IPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
[Close]
BLAST of CK937792 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.501e-15
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 3 
Query:   48 LPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 188
            +P  KKDDQK VDA LIK+IEAVP+LKTYL ARFSLK GMKPHELVF
Sbjct:  187 IPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
[Close]
BLAST of CK937792 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.490e-15
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 3 
Query:   48 LPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 188
            +P +KK+DQKTVDA LIKSIEAVP+LK YL ARFSL  GMKPHELVF
Sbjct:  187 IPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233
[Close]
BLAST of CK937792 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.448e-14
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 3 
Query:   45 VLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 188
            VLP +KKDDQK VD  L+K+IE VP+LK YL ARFSLK+GMKPHELVF
Sbjct:  187 VLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234
The following BLAST results are available for this feature:
BLAST of CK937792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RL62_ARATH3.811e-1580.8560S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL63_ARATH6.501e-1580.8560S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL61_ARATH8.490e-1578.7260S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL6_MESCR1.448e-1475.0060S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004481_H01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937792 ID=CK937792; Name=CK937792; organism=Citrus sinensis; type=EST; length=420bp
GGGGGAAGGAGAATTTTTTTGAGGCAGAGAAGGAGGAAAAGAAAGTGCTC
CCAGATGATAAGAAAGATGATCAAAAGACTGTTGATGCGCAATTGATAAA
ATCCATTGAAGCAGTGCCAGACTTGAAGACCTACTTGTCAGCGAGGTTTT
CTCTCAAGTCAGGCATGAAACCTCATGAGCTTGTCTTTTAGAGGAGTTGT
CCAGTTATCTTGAGATATATTATATCTGGAATTCTTTTGATTGAGATTCT
TGGTAATTGTATCGAGCAGATTCTATTCTGAACCTCAGTTTTTCATTAGC
AAGTTTTGTTTCATGGAATGAATATTTTATTCGCAATTTTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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