CX675373

Overview
NameCX675373
Unique NameCX675373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675373 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 7.491e-71
Identity = 125/216 (57.87%), Postives = 168/216 (77.78%), Query Frame = 3
Query:    3 PYASTVGSLMFAMICTRPDIAQAVGAVSRYMANPGGEHWITVKRILRYIRGTSDVVLCYGGSEFTVRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQQKIPVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKPINTDKFVWSRSSCGL 650
            PY+S VGSLM+AM+CTRPDIA AVG VSR++ NPG EHW  VK ILRY+RGT+   LC+GGS+  ++GY D+D AGD+D RKS+TGY+FT +G A+SW SKLQ  VALSTTEAEY+AAT+  KE IW++R L+ELG  Q++  V+CDSQSA+ +++N  +H+RTKHI V+YH++RE+V+D S+ + KI T EN AD+LTK +  +KF   +   G+
Sbjct: 1110 PYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325          
BLAST of CX675373 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 3.169e-45
Identity = 96/223 (43.05%), Postives = 139/223 (62.33%), Query Frame = 3
Query:    3 PYASTVGSLMFAMICTRPDIAQAVGAVSRYMANPGGEHWITVKRILRYIRGTSDVVLCYGGS---EFTVRGYVDSDFAGDLDKRKSTTGYVFTLAGA-AVSWVSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHK-QQKIPVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKPINTDKFVWSRSSCGLAE 656
            P  S +G LM+ M+CTRPD+  AV  +SRY +    E W  +KR+LRY++GT D+ L +  +   E  + GYVDSD+AG    RKSTTGY+F +     + W +K Q  VA S+TEAEYMA  +A +EA+W++ LL  +  K +  I ++ D+Q  + IA NP+ H R KHI ++YHF RE V++  + L+ I T+  LAD+ TKP+   +FV  R   GL +
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLLQ 1402          
BLAST of CX675373 vs. ExPASy Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.091e-16
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 3
Query:    3 PYASTVGSLMFAMICTRPDIAQAVGAVSRYMANPGGEHWITVKRILRYIRGTSDVVLCY-GGSEFTVRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVS-KLQTVVALSTTEAEYMAATQACKE 374
            PY S VG L+F     RPDI+  V  +SR++  P   H  + +R+LRY+  T  + L Y  GS+  +  Y D+      D   ST GYV  LAGA V+W S KL+ V+ + +TEAEY+ A++   E
Sbjct:  182 PYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYITASETVME 307          
BLAST of CX675373 vs. ExPASy Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.299e-14
Identity = 47/127 (37.01%), Postives = 70/127 (55.12%), Query Frame = 3
Query:    6 YASTVGSLMFAMICTRPDIAQAVGAVSRYMANPGGEHWITVKRILRYIRGTS-DVVLCYGGSEFTVRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKEAIW 383
            + S VG+L +  + TRPDI+ AV  V + M  P    +  +KR+LRY++GT    +  +  S+  V+ + DSD+AG    R+STTG+   L    +SW +K Q  V+ S+TE EY A      E  W
Sbjct:  100 FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225          
The following BLAST results are available for this feature:
BLAST of CX675373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
POLX_TOBAC7.491e-7157.87Retrovirus-related Pol polyprotein from transposon... [more]
COPIA_DROME3.169e-4543.05Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
YCH4_YEAST3.091e-1639.68Putative transposon Ty5-1 protein YCL074W OS=Sacch... [more]
M810_ARATH1.299e-1437.01Uncharacterized mitochondrial protein AtMg00810 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_61G11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61G11-N21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675373 ID=CX675373; Name=CX675373; organism=Citrus sinensis; type=EST; length=838bp
TACCGTATGCATCAACAGTGGGAAGTTTGATGTTCGCTATGATATGTACA
AGACCAGACATTGCACAAGCAGTGGGAGCAGTTAGTCGATACATGGCGAA
TCCTGGTGGAGAGCATTGGATAACTGTTAAGAGGATTCTGAGATACATAA
GAGGAACCTCAGATGTTGTGTTATGTTATGGAGGATCAGAGTTTACTGTC
AGGGGCTATGTGGATTCAGATTTTGCAGGAGATCTTGATAAAAGAAAATC
CACTACTGGTTATGTGTTTACACTTGCGGGAGCAGCTGTAAGCTGGGTTT
CGAAACTGCAGACCGTTGTGGCTTTATCTACAACAGAAGCAGAATACATG
GCAGCTACACAAGCTTGCAAGGAAGCTATTTGGATACAAAGGTTATTGGA
GGAGCTCGGGCACAAACAACAGAAAATTCCTGTATTTTGTGACAGTCAGA
GTGCCTTGCACATTGCAAGGAATCCAGCCTTTCATTCCAGGACAAAGCAC
ATAGGAGTTCAGTATCACTTCGTTCGAGAAGTAGTGGAAGATGGAAGTGT
GGATTTGCAGAAAATCCATACCAAAGAGAACCTAGCAGATGTTTTGACCA
AGCCGATAAATACTGATAAGTTTGTCTGGAGTAGATCCTCTTGTGGTCTA
GCAGAAACGTAGGCAACATGATTATGGCGAAGCAGAAAGGATGGTGTGGA
GATTGATTGCTTCTCAATCTAATCTCCAAGTGGGAGAAATGTCAAAAGCA
GCCATCTAGATGGTCAACATCCATGTTGTTCAAAGAAGAGGAATTTTGCA
GCAAGTTGGAAAGGAAAATGAGCACACGGGTTTGACAT
back to top