CX675370
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 3.478e-50 Identity = 103/260 (39.62%), Postives = 154/260 (59.23%), Query Frame = 1 Query: 1 QPYLDQFVIVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNWERPSSVTEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFN-WDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVLMQHGKVIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYGETCEIFTDHKSLKYLFTQKELNLRQRRWLELVKDFDCSINYHPGK 777 +P L++ +V++DDI+++S S EH L +V E L + L + KCEF FLGH++T +GI +P K+E I + P+ E+++FLGL GYYR+F+ F+ IA P+T KKN+K + + + +F++LK + P+L +P F + +DAS LG VL Q G ++Y SR L HE NY T + EL AIV+A K +RHYL G EI +DH+ L +L+ K+ N + RW + +FD I Y GK Sbjct: 354 RPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGK 613
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 6.559e-49 Identity = 102/260 (39.23%), Postives = 156/260 (60.00%), Query Frame = 1 Query: 1 QPYLDQFVIVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNWERPSSVTEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFNWDE-ACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVLMQHGKVIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYGETCEIFTDHKSLKYLFTQKELNLRQRRWLELVKDFDCSINYHPGK 777 +P L++ +V++DDI+I+S S EH +++V L + L + KCEF FLGHIVT +GI +P KV+ IV++ P+ E+R+FLGL GYYR+F+ ++ IA P+T+ KK K + + ++F++LK+ ++ P+L LP FV+ +DAS LG VL Q+G I++ SR L HE NY + EL AIV+A K +RHYL G I +DH+ L++L KE + RW + ++ I+Y GK Sbjct: 353 RPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGK 612
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 2.579e-45 Identity = 100/276 (36.23%), Postives = 157/276 (56.88%), Query Frame = 1 Query: 7 YLDQFVIVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNWERPSSVTEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTK-----------KNVKFNWDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVLMQ----HGKVIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYGE-TCEIFTDHKSLKYLFTQKELNLRQRRWLELVKDFDCSINYHPGKAIV 786 ++ + V+IDDI+++S+ H +LR+VL +L + L +K F +V FLG+IVT +GI ADP KV I P+SV E++ FLG+ YYR+F++ ++ +A PLTNLT+ V DE +SF +LKS L ++ +L P F + +DAS +G VL Q + IAY SR L E+NY T + E+ AI+++L R YLYG T +++TDH+ L + + N + +RW +++++C + Y PGK+ V Sbjct: 272 HIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNV 547
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 3.153e-43 Identity = 97/263 (36.88%), Postives = 151/263 (57.41%), Query Frame = 1 Query: 28 VFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNWERPSSVTEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTK-----------KNVKFNWDEACEKSFQELKSHLVTAPV-LTLPSEGGSFVIYSDASRKGLGCVLMQHGKVIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYG-ETCEIFTDHKSLKYLFTQKELNLRQRRWLELVKDFDCSINYHPGK 777 V++DD++I+S+++ +H H+ VL+ L + + +K F+ + V +LG IV+K+G +DP KV+ I + P V +VRSFLGLA YYR F+K F++IA P+T++ K K + ++E +FQ L++ L + V L P F + +DAS G+G VL Q G+ I SR LK EQNY T++ EL AIV+AL +++LYG IFTDH+ L + + N + +RW + + + Y PGK Sbjct: 338 VYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGK 600
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 3.608e-39 Identity = 90/265 (33.96%), Postives = 145/265 (54.72%), Query Frame = 1 Query: 13 DQFVIVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNWERPSSVTEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFNWDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVLMQHGK-----VIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYG--ETCEIFTDHKSLKYLFTQKE--LNLRQRRWLELVKDFDCSINYHPGKA 780 + V+ ++DDILI+SKS+ EH H++ VL+ L+ L KCEF +V F+G+ ++++G + ++ ++ W++P + E+R FLG Y R+F+ S + PL NL KK+V++ W ++ + +K LV+ PVL ++ +DAS +G VL Q + Y S ++ + NY D E+ AI+ +LK WRHYL E +I TDH++L T + N R RW ++DF+ INY PG A Sbjct: 558 ESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSA 822
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 8.037e-39 Identity = 91/254 (35.83%), Postives = 137/254 (53.94%), Query Frame = 1 Query: 28 VFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNWERPSSVTEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFNWDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVLMQ----HGKVIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYGETCEIFTDHKSLKYLFTQKELNLRQRRWLELVKDFDCSINYHPGK 777 +++DD+++ S+K +L V RE L +KC F++ V FLGH T +GI D K +VI N+ P R F+ YYRRF+K F+ + +T L KKNV F W + C+K+F LKS L+ +L P F I +DAS++ G VL Q H +AYASR E N T + ELAAI +A+ +R Y+YG+ + TDH+ L YLF+ + + R +++++ ++ Y GK Sbjct: 471 LYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGK 724
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.371e-38 Identity = 89/265 (33.58%), Postives = 145/265 (54.72%), Query Frame = 1 Query: 13 DQFVIVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNWERPSSVTEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFNWDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVLMQHGK-----VIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYG--ETCEIFTDHKSLKYLFTQKE--LNLRQRRWLELVKDFDCSINYHPGKA 780 + V+ ++D+ILI+SKS+ EH H++ VL+ L+ L KCEF +V F+G+ ++++G + ++ ++ W++P + E+R FLG Y R+F+ S + PL NL KK+V++ W ++ + +K LV+ PVL ++ +DAS +G VL Q + Y S ++ + NY D E+ AI+ +LK WRHYL E +I TDH++L T + N R RW ++DF+ INY PG A Sbjct: 558 ESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSA 822
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.371e-38 Identity = 89/265 (33.58%), Postives = 145/265 (54.72%), Query Frame = 1 Query: 13 DQFVIVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNWERPSSVTEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFNWDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVLMQHGK-----VIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYG--ETCEIFTDHKSLKYLFTQKE--LNLRQRRWLELVKDFDCSINYHPGKA 780 + V+ ++D+ILI+SKS+ EH H++ VL+ L+ L KCEF +V F+G+ ++++G + ++ ++ W++P + E+R FLG Y R+F+ S + PL NL KK+V++ W ++ + +K LV+ PVL ++ +DAS +G VL Q + Y S ++ + NY D E+ AI+ +LK WRHYL E +I TDH++L T + N R RW ++DF+ INY PG A Sbjct: 558 ESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSA 822
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 5.760e-37 Identity = 92/259 (35.52%), Postives = 147/259 (56.76%), Query Frame = 1 Query: 16 QFVIVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNWERPSSVTEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFNWDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVLMQHGK------VIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYGETCEIFTDHKSLKYLFTQKELNLRQRRWLELVKDFDCSINYHPG 774 +FV V++DDILI+S+S +EH HL VLE L+ + L K KKC+F + FLG+ + + I+ K I ++ P +V + + FLG+ YYRRF+ S IA P+ K W E +K+ ++LK+ L +PVL + ++ + +DAS+ G+G VL + V+ Y S+ L+S ++NYP +LEL I+ AL +R+ L+G+ + TDH SL L + E R +RWL+ + +D ++ Y G Sbjct: 767 RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICD--KSQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAG 1023
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3) HSP 1 Score: 153.68 bits (387), Expect = 1.283e-36 Identity = 92/259 (35.52%), Postives = 145/259 (55.98%), Query Frame = 1 Query: 16 QFVIVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNWERPSSVTEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFNWDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVLMQHGK------VIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYGETCEIFTDHKSLKYLFTQKELNLRQRRWLELVKDFDCSINYHPG 774 +FV V++DDILI+S+S +EH HL VLE L+ + L K KKC+F + FLG+ + + I+ K I ++ P +V + + FLG+ YYRRF+ S IA P+ K W E +K+ +LK L +PVL + ++ + +DAS+ G+G VL + V+ Y S+ L+S ++NYP +LEL I+ AL +R+ L+G+ + TDH SL L + E R +RWL+ + +D ++ Y G Sbjct: 741 RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICD--KSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAG 997 The following BLAST results are available for this feature:
BLAST of CX675370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675370 ID=CX675370; Name=CX675370; organism=Citrus sinensis; type=EST; length=872bpback to top |