CK937765

Overview
NameCK937765
Unique NameCK937765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2052 contig Csv1_Contig2052:1..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937765 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.734e-32
Identity = 83/202 (41.09%), Postives = 123/202 (60.89%), Query Frame = 3
Query:   99 FTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATKEGS-KADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQIS 686
            F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+A   +I R  T++++TVLF  FG+  L +      D G           KK D +F+        G  +    +   ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS
Sbjct:   97 FVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGYAT-TVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDVETGTSITVPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKIS 296          
BLAST of CK937765 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.369e-32
Identity = 81/201 (40.30%), Postives = 120/201 (59.70%), Query Frame = 3
Query:   99 FTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQIS 686
            F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+A   +I R  T++++T LF  FG+  L +      D G           KK D +F+          +        ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS
Sbjct:   97 FVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGYAT-TVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKIS 295          
BLAST of CK937765 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.369e-32
Identity = 81/201 (40.30%), Postives = 120/201 (59.70%), Query Frame = 3
Query:   99 FTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQIS 686
            F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+A   +I R  T++++T LF  FG+  L +      D G           KK D +F+          +        ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS
Sbjct:   97 FVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGYAT-TVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKIS 295          
BLAST of CK937765 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.197e-31
Identity = 79/209 (37.80%), Postives = 115/209 (55.02%), Query Frame = 3
Query:  108 SLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANA--------GA---------TKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQI 683
            S++M    EIGDKTF  AA+LA  + R  V +G   AL +MT+L  ++G AAP L  RKLT  +  VLF  FG+  L +A              + +  +  AN         GA         ++ G     +LK + R  ++  FSP+F+KAF++TF  EWGD+SQ+ATI +AA +N +GV +G  +G A CT  AVI GK ++++I
Sbjct:   53 SISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNEIAANGPIDQLLEEGAAPSHYTGHRSRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKI 261          
BLAST of CK937765 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.272e-28
Identity = 78/196 (39.80%), Postives = 109/196 (55.61%), Query Frame = 3
Query:   99 FTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANAGATKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQIS 686
            FT  L +  +SE+GDKTFF A ILAMR+PRR VL G +G L  MTILS ++G     L +R + ++    LF  FG   LWDA               K  A+ +    A K  +  + +LK   R +       I +++F++TF  EWGD++Q+ATI LAA  N +GV  G I+G  +C   AV+GGK +A +IS
Sbjct:    5 FTAGLLLITVSELGDKTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFTFLPTRYI-NYAEVALFLIFGTKLLWDA------------RRIKATANLEEMEDAEKAIASGEKKLKIVPRGW------GIVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGRIS 181          
BLAST of CK937765 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.374e-26
Identity = 75/213 (35.21%), Postives = 113/213 (53.05%), Query Frame = 3
Query:   93 QGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAF---SDGGXXXXXXXXXKKL-------DADFKANAGATK-----EGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQIS 686
            + F  S++M  LSEIGDKTF  AA++AMRH R LV S    +L +MTILS VVG +A   +S + T     +LF  FG     +      D G         +++       D D     G T      + +    ++  + R   S  FSP++++ F + F GE GD+SQ++ I +A D + + V+ G +IG A+C+  AV+GGK LA++IS
Sbjct:   40 KSFLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLSERYTAFFAGILFLVFGYKLTMEGLEMSKDAGVEEEMAEVEEEIAIKDMNQDMDDVEKGGDTAYDKQLKNASIGKKIVHRIRELASFMFSPVWVQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRIS 252          
BLAST of CK937765 vs. ExPASy Swiss-Prot
Match: YLY5_SCHPO (UPF0016 membrane protein C186.05c OS=Schizosaccharomyces pombe GN=SPAC186.05c PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 66/213 (30.99%), Postives = 100/213 (46.95%), Query Frame = 3
Query:   93 QGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKL------DADFKANAGATKEGSKADDELKKQR----------RPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQI 683
            Q    S++M +  E+GDK+F   A+LA ++ R  V  G   AL  MT  + +VG AAP L  + +TH +   LF  FG+  L ++               K+      + D K         S       K +          +   S+ FS  F+KAF++ F  E GD+SQ+ATI ++A E    V +G  IG  LCT  AVI G+ ++++I
Sbjct:   25 QNIGMSISMIIGCELGDKSFIVTALLAYQYGRASVFFGSYLALFFMTSFAVLVGRAAPFLFPKSITHILGGTLFLIFGVKMLKESKEVRESQQSLENEFDKVEKIIVNEEDMKKTLELGLPASNRSSSTLKDKFFKVFSMSCFKNLFSKKFSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTMVAVIVGRYISNKI 237          
The following BLAST results are available for this feature:
BLAST of CK937765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM165_HUMAN3.734e-3241.09Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
TM165_RAT6.369e-3240.30Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE6.369e-3240.30Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
YD68_SCHPO9.197e-3137.80UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
Y615_SYNY34.272e-2839.80UPF0016 membrane protein sll0615 OS=Synechocystis ... [more]
YB37_YEAST1.374e-2635.21UPF0016 membrane protein YBR187W OS=Saccharomyces ... [more]
YLY5_SCHPO3.069e-1830.99UPF0016 membrane protein C186.05c OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004482_C03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937765 ID=CK937765; Name=CK937765; organism=Citrus sinensis; type=EST; length=686bp
GGGGGAGAGAGTCACATCTTCTCTGAAGCGCGTACAAGCTTATAGTNNNN
NTCTCTGTTCGTTGAAGCATATCAAAGATGAGCTCAGTTGTGCAGGGTTT
TACCAAGTCGCTTGCCATGACTGTTCTATCTGAGATCGGCGACAAGACGT
TTTTTGCCGCTGCGATCTTGGCAATGCGTCACCCGCGGAGACTGGTCTTG
TCAGGTTGCCTGGGAGCTTTGATTGTGATGACTATTCTTTCTGCTGTTGT
TGGCTGGGCCGCTCCAAATCTGATCTCTCGTAAATTGACTCATCATATAA
CAACAGTGCTGTTCTTTGGATTTGGTCTATGGTCTTTATGGGATGCCTTT
AGTGATGGAGGGGAGGCTGAAGAATTTGAAGAAGTTGAAAAAAAGCTGGA
TGCTGACTTTAAAGCAAATGCAGGAGCAACCAAAGAGGGCAGCAAGGCTG
ATGATGAATTAAAAAAGCAAAGGCGGCCATTCCTCTCACAGTTCTTCTCT
CCCATCTTTTTGAAGGCATTTTCAATTACTTTCTTTGGTGAATGGGGTGA
CAAGAGCCAGTTAGCTACCATTGGTTTAGCTGCCGATGAGAACCCATTTG
GCGTTGTTCTTGGCGGAATTATAGGACAAGCATTGTGTACGACTGCTGCT
GTCATTGGAGGAAAGAGCTTGGCGTCTCAGATATCT
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