CK937750

Overview
NameCK937750
Unique NameCK937750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937750_ssr242 microsatellite CK937750_ssr242:242..256. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2051 contig Csv1_Contig2051:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937750 vs. ExPASy Swiss-Prot
Match: KINB1_ARATH (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.981e-51
Identity = 97/140 (69.29%), Postives = 115/140 (82.14%), Query Frame = 2
Query:  308 SMSNISPPATPHRSRSPLLFAPQVPVAPLQRADDPPLFNQMRQHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCV 727
            SMS+ SPP +P RS SP LFAPQVPVAPLQRA+ PP  N ++ ++S     NP E+G+PTIITWN GGN+VAVEGSWDNW SR+ L +SGKDHSIL VLPSG+YHYK IVDG+ +YIPDLPFVADE+G VCN+LDVH+ V
Sbjct:   45 SMSS-SPPGSPARSPSPFLFAPQVPVAPLQRANAPPP-NNIQWNQSQRVFDNPPEQGIPTIITWNQGGNDVAVEGSWDNWRSRKKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVHNFV 182          
BLAST of CK937750 vs. ExPASy Swiss-Prot
Match: KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.243e-36
Identity = 76/138 (55.07%), Postives = 98/138 (71.01%), Query Frame = 2
Query:  323 SPPATPHRSRSPLLFAPQVPVAPLQRADDPPLFNQ--MRQHES-HAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCV 727
            SPP +P  ++SPL+FAPQVPV PLQR D+  + N   M+   S +  ASN  E+G+PT+ITW +GG E+AVEGSWDNW +R  L RSGKD +I+ VLPSGVY Y+FIVDG WR+ P+LP   D+ G   N+LD+   V
Sbjct:   49 SPPHSPRATQSPLMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASN--EQGIPTMITWCHGGKEIAVEGSWDNWKTRSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDLQDYV 184          
BLAST of CK937750 vs. ExPASy Swiss-Prot
Match: AAKB2_RAT (5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 2
Query:  464 PLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDV 715
            P ++  PT+I W+ GG EV + GS++NW+++  L +S  D   +L LP G + YKF VDG W + P  P V  +LG + NL+ V
Sbjct:   71 PTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHV 154          
BLAST of CK937750 vs. ExPASy Swiss-Prot
Match: AAKB2_MOUSE (5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 2
Query:  464 PLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDV 715
            P ++  PT+I W+ GG EV + GS++NW+++  L +S  D   +L LP G + YKF VDG W + P  P V  +LG + NL+ V
Sbjct:   71 PAQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHV 154          
BLAST of CK937750 vs. ExPASy Swiss-Prot
Match: AAKB2_HUMAN (5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 2
Query:  464 PLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDV 715
            P ++  PT+I W+ GG EV + GS++NW+++  L +S  D   +L LP G + YKF VDG W + P  P V  +LG + NL+ V
Sbjct:   72 PTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHV 155          
BLAST of CK937750 vs. ExPASy Swiss-Prot
Match: AAKB1_MOUSE (5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 38/94 (40.43%), Postives = 52/94 (55.32%), Query Frame = 2
Query:  434 QHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDV 715
            QH+  A    P +   PT+  W  GG EV + GS++NW S+  L RS  +   +L LP G + YKF VDG W + P  P V  +LG V N++ V
Sbjct:   64 QHDLEANDKAPAQAR-PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQV 155          
BLAST of CK937750 vs. ExPASy Swiss-Prot
Match: AAKB1_RAT (5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 37/94 (39.36%), Postives = 51/94 (54.26%), Query Frame = 2
Query:  434 QHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDV 715
            QH+       P +   PT+  W  GG EV + GS++NW S+  L RS  +   +L LP G + YKF VDG W + P  P V  +LG V N++ V
Sbjct:   64 QHDLEVNEKAPAQAR-PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQV 155          
BLAST of CK937750 vs. ExPASy Swiss-Prot
Match: AAKB1_PIG (5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus scrofa GN=PRKAB1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 2
Query:  482 PTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDV 715
            PT+  W  GG EV + GS++NW S+  L RS  +   +L LP G + YKF+VDG W + P  P V  +LG V N++ V
Sbjct:   44 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVNNIIQV 120          
BLAST of CK937750 vs. ExPASy Swiss-Prot
Match: AAKB1_PONAB (5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 2
Query:  482 PTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDV 715
            PT+  W  GG EV + GS++NW S+  L RS  +   +L LP G + YKF VDG W + P  P V  +LG V N++ V
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQV 155          
BLAST of CK937750 vs. ExPASy Swiss-Prot
Match: AAKB1_HUMAN (5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 2
Query:  482 PTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDV 715
            PT+  W  GG EV + GS++NW S+  L RS  +   +L LP G + YKF VDG W + P  P V  +LG V N++ V
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQV 155          
The following BLAST results are available for this feature:
BLAST of CK937750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
KINB1_ARATH3.981e-5169.29SNF1-related protein kinase regulatory subunit bet... [more]
KINB2_ARATH1.243e-3655.07SNF1-related protein kinase regulatory subunit bet... [more]
AAKB2_RAT6.638e-1441.675'-AMP-activated protein kinase subunit beta-2 OS=... [more]
AAKB2_MOUSE6.638e-1441.675'-AMP-activated protein kinase subunit beta-2 OS=... [more]
AAKB2_HUMAN6.638e-1441.675'-AMP-activated protein kinase subunit beta-2 OS=... [more]
AAKB1_MOUSE6.213e-1240.435'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_RAT1.384e-1139.365'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_PIG1.384e-1143.595'-AMP-activated protein kinase subunit beta-1 (Fr... [more]
AAKB1_PONAB1.808e-1143.595'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_HUMAN1.808e-1143.595'-AMP-activated protein kinase subunit beta-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_D01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937750 ID=CK937750; Name=CK937750; organism=Citrus sinensis; type=EST; length=728bp
TTTTTTTTTTAATTCTTAAACAAATCGGATAAACGATAATTGCGAGAGAG
ACTAGACTAGAGAGAGATTCAACCGGCAGCTTGCCCTTTGCCCTTTGGCC
GCTGCATTTTCATTTTTCAAGTCGAGTCAGCGGCGTCGAATCCCGTAGAT
AAAGTCGAAAACTGAGAGTGCATTTTGTCAAAGATTTGAGCTTGGATCTG
TGATTGTGAATGTGATGGGAAATGCAAACGGGAGAGAAGAGGGAGGAGGA
GGAGGAGTAGCAGGAGCAGGAGCAAACGATGAGATTCAGATCAACGGCGG
TGATCATTCAATGAGCAATATCAGTCCTCCAGCGACTCCTCATCGTTCTC
GATCTCCTCTCTTGTTCGCTCCTCAGGTTCCTGTTGCTCCCTTGCAAAGG
GCTGATGATCCTCCCCTTTTCAATCAAATGAGGCAACATGAATCTCATGC
AGCTGCTAGTAATCCTCTGGAGAAAGGAGTCCCCACTATTATTACATGGA
ATTATGGTGGTAATGAAGTGGCTGTGGAAGGATCCTGGGATAATTGGACA
TCAAGGAGGATACTTCATAGATCTGGAAAGGATCACTCAATTCTTTTGGT
CCTTCCATCTGGCGTATACCATTACAAGTTCATCGTGGATGGTGATTGGA
GATATATTCCAGATTTGCCCTTTGTAGCTGATGAACTGGGTGGTGTTTGT
AATCTTCTTGATGTTCATAGTTGCGTGC
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