CK937727

Overview
NameCK937727
Unique NameCK937727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERG_ARATH (GTP-binding protein ERG OS=Arabidopsis thaliana GN=ERG PE=1 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 3.095e-67
Identity = 141/300 (47.00%), Postives = 180/300 (60.00%), Query Frame = 3
Query:   15 MKALRALRTLAPFAEK-----PNKPRLNPLFIHRFYSAQPQQTD----NETENDCDSVFDSSYFRIPTIDDPQNNNAAKKQEPNWDEKYRERTDRIVFGEEAQKGKLRIFQEEE--------EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVAVGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNXXXXXXXXXXXXXXAEQF 863
            MKA R+LR L   +       P  P     F+ RFYSAQP   +    NE  +  DSVFDSS +    IDD   ++  K +E  WD+ YRER ++  FG   +KGK+++ +EE         +                                S+ VGIIG PNAGKSS+ N+MVGTKV+A SRKTNTTTHEVLGV+TK DTQ+C FDTPGLML KSGY +KD+K RV++AW++V+LF+VL+V+FDVHRHL SPDSRV+RLI+ MG++  PKQKRVLCMN              AE+F
Sbjct:    1 MKAFRSLRILISISRTTTKTTPRNPHQAQNFLRRFYSAQPNLDEPTSINEDGSSSDSVFDSSQY---PIDDSNVDSVKKPKEATWDKGYRERVNKAFFGNLTEKGKVKVAEEESSEDDEDSVDRSRILAKALLEAALESPDEELGEGEVREEDQKSLNVGIIGPPNAGKSSLTNFMVGTKVAAASRKTNTTTHEVLGVLTKGDTQVCFFDTPGLMLKKSGYGYKDIKARVQNAWTSVDLFDVLIVMFDVHRHLMSPDSRVVRLIKYMGEEENPKQKRVLCMNKVDLVEKKKDLLKVAEEF 297          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERG_ANTMA (GTP-binding protein ERG OS=Antirrhinum majus GN=ERG PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.464e-64
Identity = 135/273 (49.45%), Postives = 171/273 (62.64%), Query Frame = 3
Query:   15 MKALRALRTLAPFAEKPNKPRLNPLFIHRFYSAQPQQTDNETE-------NDCDSVFDSSYFRIPTIDDPQNNNAAKKQEPNWDEKYRERTDRIVFGEEAQKGKLRIFQ-EEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVAVGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 809
            MKA+RA   L P     +      +++HRFYSAQPQ TD+E         +  D+VFDSS+F +    D  N  A+  +   WDE+YR+R    VF E+      +I + +EE+                                S++VGIIGAPNAGKS++ NY+VGTKVSAVSRKTNTTTHEVLGV+TK DTQIC FDTPGLML KSG  + D+KVR ES WS++ L++VL+V+FDVHRHLT PDSRV+RLIER+G  +   QKRVLCMN
Sbjct:    1 MKAVRAALRLRPLTNSIS----TSVYLHRFYSAQPQHTDDEHHPKPEELLHQSDAVFDSSHFDL----DLNNLAASGAETTTWDERYRDRVKSRVFDEDDTSSYSKILKRDEEKKYKSAALAKSLLEAALDDEEVEVGEVKEEDQKSLSVGIIGAPNAGKSALTNYIVGTKVSAVSRKTNTTTHEVLGVLTKRDTQICFFDTPGLMLKKSGIPYNDIKVRNESGWSSITLYDVLIVIFDVHRHLTRPDSRVVRLIERVGSVSSTSQKRVLCMN 265          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_DESDA (GTP-binding protein era homolog OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=era PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.970e-13
Identity = 34/99 (34.34%), Postives = 61/99 (61.62%), Query Frame = 3
Query:  438 VGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD 734
            V ++G PNAGKS+++N ++G KV+ V+ K  TT ++++G++T  D Q    DTPGL   +   S    K  +++ W ++N  +++M V D H ++  P+
Sbjct:   11 VALMGPPNAGKSTLLNALLGQKVTIVTPKPQTTRNQIVGILTDDDAQTIFMDTPGLTQVRGRLS----KTMIQAVWQSLNQADIIMPVLDAHLYIRHPE 105          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_DESVV (GTP-binding protein era homolog OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=era PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.361e-13
Identity = 33/99 (33.33%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  438 VGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD 734
            V +IG PNAGKS+++N ++G KV+ V+ K  TT ++++G++++ D Q+   DTPG+   +   +    K+ +++AW ++N  + L+V+ D   ++  PD
Sbjct:   11 VALIGPPNAGKSTLLNALIGQKVAIVTSKPQTTRNQIVGILSRKDAQVVFMDTPGIHQLRGRLN----KMLLQTAWQSMNAADALIVMLDGDLYIRKPD 105          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_DESVH (GTP-binding protein era homolog OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=era PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.361e-13
Identity = 33/99 (33.33%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  438 VGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD 734
            V +IG PNAGKS+++N ++G KV+ V+ K  TT ++++G++++ D Q+   DTPG+   +   +    K+ +++AW ++N  + L+V+ D   ++  PD
Sbjct:   11 VALIGPPNAGKSTLLNALIGQKVAIVTSKPQTTRNQIVGILSRKDAQVVFMDTPGIHQLRGRLN----KMLLQTAWQSMNAADALIVMLDGDLYIRKPD 105          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_RICBR (GTP-binding protein era homolog OS=Rickettsia bellii (strain RML369-C) GN=era PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.488e-13
Identity = 38/100 (38.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  429 SVAVGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS 728
            +V+V IIG PN+GKS+++N ++G K+S V+ K  TT   + G++T  DTQI ++DTPG+   K        K  V  AWS+++  +++M++ D  + L S
Sbjct:    8 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLNDTQIILYDTPGIFEPKGTLE----KAMVRCAWSSLHSADIVMLIIDSLKPLDS 103          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_RICB8 (GTP-binding protein era homolog OS=Rickettsia bellii (strain OSU 85-389) GN=era PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.488e-13
Identity = 38/100 (38.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  429 SVAVGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS 728
            +V+V IIG PN+GKS+++N ++G K+S V+ K  TT   + G++T  DTQI ++DTPG+   K        K  V  AWS+++  +++M++ D  + L S
Sbjct:    8 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLNDTQIILYDTPGIFEPKGTLE----KAMVRCAWSSLHSADIVMLIIDSLKPLDS 103          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_RICAH (GTP-binding protein era homolog OS=Rickettsia akari (strain Hartford) GN=era PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.668e-12
Identity = 34/93 (36.56%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  429 SVAVGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFD 707
            +++V IIG PN+GKS+++N ++G K+S V+ K  TT   + G++T  DTQ+ ++DTPG+   K        K  V  AWS+++  +++M++ D
Sbjct:    6 TISVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLE----KAMVRCAWSSLHSADLVMLIID 94          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_RICCK (GTP-binding protein era homolog OS=Rickettsia canadensis (strain McKiel) GN=era PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.179e-12
Identity = 35/93 (37.63%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  429 SVAVGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFD 707
            +V+V IIG PN+GKS+++N ++G K+S V+ K  TT   + G++T  DTQ+ ++DTPG+   K        K  V  AWS+++  +++M++ D
Sbjct:    8 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGTLE----KAMVRCAWSSLHSADLVMLIID 96          
BLAST of CK937727 vs. ExPASy Swiss-Prot
Match: ERA_DESVM (GTP-binding protein era homolog OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=era PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.179e-12
Identity = 30/99 (30.30%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  438 VGIIGAPNAGKSSIINYMVGTKVSAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD 734
            V ++G PNAGKS+++N  +G KV+ V+ +  TT ++++G++++ D Q+   DTPG+   +   +    K+ +++AW +++  +V++V+ D   ++  PD
Sbjct:   11 VALLGPPNAGKSTLLNSALGHKVAIVTPRAQTTRNQIVGILSEPDAQVIFMDTPGIHQQRGRMN----KILLQTAWQSMHSADVILVMLDADLYIKKPD 105          
The following BLAST results are available for this feature:
BLAST of CK937727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ERG_ARATH3.095e-6747.00GTP-binding protein ERG OS=Arabidopsis thaliana GN... [more]
ERG_ANTMA5.464e-6449.45GTP-binding protein ERG OS=Antirrhinum majus GN=ER... [more]
ERA_DESDA1.970e-1334.34GTP-binding protein era homolog OS=Desulfovibrio d... [more]
ERA_DESVV3.361e-1333.33GTP-binding protein era homolog OS=Desulfovibrio v... [more]
ERA_DESVH3.361e-1333.33GTP-binding protein era homolog OS=Desulfovibrio v... [more]
ERA_RICBR7.488e-1338.00GTP-binding protein era homolog OS=Rickettsia bell... [more]
ERA_RICB87.488e-1338.00GTP-binding protein era homolog OS=Rickettsia bell... [more]
ERA_RICAH1.668e-1236.56GTP-binding protein era homolog OS=Rickettsia akar... [more]
ERA_RICCK2.179e-1237.63GTP-binding protein era homolog OS=Rickettsia cana... [more]
ERA_DESVM2.179e-1230.30GTP-binding protein era homolog OS=Desulfovibrio v... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004482_F02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937727 ID=CK937727; Name=CK937727; organism=Citrus sinensis; type=EST; length=868bp
GGGGAATCCTTGAAATGAAAGCTTTGAGAGCTTTAAGAACCCTCGCGCCC
TTTGCAGAAAAACCCAATAAGCCCCGTTTAAACCCTTTATTCATTCATCG
ATTCTACTCGGCGCAGCCACAACAAACAGACAATGAAACCGAAAACGACT
GTGATTCAGTTTTTGACAGTTCCTATTTCAGAATTCCGACGATTGATGAT
CCCCAGAATAATAACGCCGCCAAAAAGCAAGAGCCTAATTGGGATGAGAA
GTACAGAGAGAGGACTGATAGGATAGTCTTTGGGGAAGAAGCCCAGAAAG
GGAAGTTGAGGATTTTTCAGGAGGAAGAAGAGGAGAGGAAGCATAGAGCT
CTTGCAAAAGCGCTTCTTCAGGCTGCTTTGGAGAGACAAGAGGAGGAGGA
AGAAGAGGTGAAGGAAGAGGACCAGAAATCGGTTGCTGTTGGGATTATTG
GCGCGCCTAATGCCGGAAAGTCTTCCATCATTAACTACATGGTTGGGACA
AAGGTTTCTGCTGTTTCTCGGAAGACGAATACAACTACTCATGAAGTATT
AGGAGTGATGACAAAGGCGGACACTCAAATTTGCATCTTTGATACCCCTG
GACTTATGTTGAACAAAAGTGGGTACTCTCACAAAGATGTCAAGGTTCGC
GTGGAAAGTGCATGGAGTGCGGTTAATCTATTTGAGGTGCTCATGGTTGT
TTTTGATGTTCATAGACATCTTACCAGTCCTGATTCAAGGGTTATAAGAT
TGATTGAACGTATGGGCAAACAAGCTCCTCCAAAGCAGAAGCGAGTTTTA
TGTATGAATAAAGTTGATTTAGTTACAAAGAAAAAAGACTTGCTAAAAGT
TGCTGAGCAGTTTNNNNA
back to top