CK937719

Overview
NameCK937719
Unique NameCK937719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937719 vs. ExPASy Swiss-Prot
Match: MGRN1_RAT (Probable E3 ubiquitin-protein ligase MGRN1 OS=Rattus norvegicus GN=Mgrn1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.294e-25
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 3
Query:   18 TGNSQXXMAVFEKKEEGGFRVQVIKQILWVNRVRYELQEIYGIGS-----TVAGDE--TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 338
            TG++   +A FEK  +G F V+ +KQ   V+RV Y LQEIYGI +     T   D+  +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q N CPICR P   LL+I+
Sbjct:  215 TGHAHVLLAAFEKHVDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSSECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 328          
BLAST of CK937719 vs. ExPASy Swiss-Prot
Match: MGRN1_MOUSE (Probable E3 ubiquitin-protein ligase MGRN1 OS=Mus musculus GN=Mgrn1 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.294e-25
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 3
Query:   18 TGNSQXXMAVFEKKEEGGFRVQVIKQILWVNRVRYELQEIYGIGS-----TVAGDE--TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 338
            TG++   +A FEK  +G F V+ +KQ   V+RV Y LQEIYGI +     T   D+  +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q N CPICR P   LL+I+
Sbjct:  214 TGHAHVLLAAFEKHVDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSSECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 327          
BLAST of CK937719 vs. ExPASy Swiss-Prot
Match: MGRN1_HUMAN (Probable E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.294e-25
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 3
Query:   18 TGNSQXXMAVFEKKEEGGFRVQVIKQILWVNRVRYELQEIYGIGS-----TVAGDE--TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 338
            TG++   +A FEK  +G F V+ +KQ   V+RV Y LQEIYGI +     T   D+  +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q N CPICR P   LL+I+
Sbjct:  214 TGHAHVLLAAFEKHMDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 327          
BLAST of CK937719 vs. ExPASy Swiss-Prot
Match: MGRN1_DANRE (Probable E3 ubiquitin-protein ligase MGRN1 OS=Danio rerio GN=mgrn1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.030e-25
Identity = 52/114 (45.61%), Postives = 75/114 (65.79%), Query Frame = 3
Query:   18 TGNSQXXMAVFEKKEEGGFRVQVIKQILWVNRVRYELQEIYGIGS-------TVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 338
            TG++   +A FE+  +G F V+ +KQ   V+RV Y LQEIYGI +       +   + +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q N CPICR P   LL+I+
Sbjct:  212 TGHAHVLLAAFERHVDGSFSVKPLKQKQIVDRVSYLLQEIYGIENRNNQETKSTEDENSDNSSECVVCLSDLRDTLILPCRHLCLCNACADTLRYQANNCPICRLPFRALLQIR 325          
BLAST of CK937719 vs. ExPASy Swiss-Prot
Match: RN157_XENLA (RING finger protein 157 OS=Xenopus laevis GN=rnf157 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 57/114 (50.00%), Postives = 75/114 (65.79%), Query Frame = 3
Query:   21 GNSQXXMAVFEKKEEGGFRVQVIKQILWVNRVRYELQEIYGI-------GSTVAGDE-TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 338
            G+S   MA FEK  +G F V+ +KQ   V+ V Y LQEIYGI        S VA DE +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q + CPICR P   LL+I+
Sbjct:  213 GHSHVLMATFEKHADGSFCVKPLKQKQVVDGVSYLLQEIYGIENKYNSQDSKVAEDELSDNSAECVVCLSDVRDTLILPCRHLCLCNACADTLRYQASNCPICRLPFRALLQIR 326          
BLAST of CK937719 vs. ExPASy Swiss-Prot
Match: RN157_HUMAN (RING finger protein 157 OS=Homo sapiens GN=RNF157 PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.703e-23
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = 3
Query:   21 GNSQXXMAVFEKKEEGGFRVQVIKQILWVNRVRYELQEIYGI-------GSTVAGDE-TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 338
            G+    +  FEK  +G F V+ +KQ   V+ V Y LQEIYGI        S VA DE +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q N CPICR P   LL+I+
Sbjct:  213 GHCHVLLGTFEKHTDGTFCVKPLKQKQVVDGVSYLLQEIYGIENKYNTQDSKVAEDEVSDNSAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPFRALLQIR 326          
BLAST of CK937719 vs. ExPASy Swiss-Prot
Match: RN157_MOUSE (RING finger protein 157 OS=Mus musculus GN=Rnf157 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.794e-23
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 3
Query:   21 GNSQXXMAVFEKKEEGGFRVQVIKQILWVNRVRYELQEIYGI-------GSTVAGDE-TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 338
            G+    +  FEK  +G F V+ +KQ   V+ V Y LQEIYGI        S VA D+ +D+  ECV+CLS+ RDT +LPCRH+C+C+ CA  L++Q N CPICR P   LL+I+
Sbjct:  213 GHCHVLLGTFEKHPDGTFCVKPLKQKQVVDGVSYLLQEIYGIENKYNTQDSKVAEDDVSDNSAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPFRALLQIR 326          
The following BLAST results are available for this feature:
BLAST of CK937719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MGRN1_RAT5.294e-2548.25Probable E3 ubiquitin-protein ligase MGRN1 OS=Ratt... [more]
MGRN1_MOUSE5.294e-2548.25Probable E3 ubiquitin-protein ligase MGRN1 OS=Mus ... [more]
MGRN1_HUMAN5.294e-2548.25Probable E3 ubiquitin-protein ligase MGRN1 OS=Homo... [more]
MGRN1_DANRE9.030e-2545.61Probable E3 ubiquitin-protein ligase MGRN1 OS=Dani... [more]
RN157_XENLA1.540e-2450.00RING finger protein 157 OS=Xenopus laevis GN=rnf15... [more]
RN157_HUMAN1.703e-2348.25RING finger protein 157 OS=Homo sapiens GN=RNF157 ... [more]
RN157_MOUSE3.794e-2347.37RING finger protein 157 OS=Mus musculus GN=Rnf157 ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004482_G05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937719 ID=CK937719; Name=CK937719; organism=Citrus sinensis; type=EST; length=655bp
GGGCAGAAGCAAANNNAACCGGGAATTCTCAAATNNNTATGGCAGTGTTT
GAAAAGAAAGAGGAAGGTGGCTTCCGTGTACAGGTAATTAAGCAGATCTT
GTGGGTGAACAGAGTGAGGTATGAGCTTCAGGAAATTTACGGAATTGGGA
GTACAGTTGCTGGTGATGAGACTGATTCTGGAAAAGAATGTGTCATCTGC
TTGTCGGAACCACGGGACACAACGGTTCTCCCATGCCGACACATGTGCAT
GTGCAGTGAATGTGCGAAGGTTTTGCAGTTCCAGACAAACCGGTGTCCAA
TTTGCAGGCAACCGGTTGAGAGGCTGCTGGAAATTAAGGTGAATAATGCA
GCTGATGATTGAGGACGGTCTCTGCTCCCAAATGATTGGCTTTTGTACTC
GAAAAAAGAAGGGAAGAAAAAATTGTTGGGCCAATGACTTCTCATGTATA
TATGGTTTCGTGCTGTTCTATGAGTTACATATAGAAATTCTTTTGATTTT
TTTTTGGGTTTGGTACCTTGGTTCAAAGCATTATCTAATTACTGTTGTGT
AAGCCTGTCGAGGAATCCTTAATATATGTATTAAACGAAAGACATCATTG
CTAGTTAACAACAACATATAATCTTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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