CK937716

Overview
NameCK937716
Unique NameCK937716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10712 contig Csv1_Contig10712:137..942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK937716 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.259e-19
Identity = 63/161 (39.13%), Postives = 85/161 (52.80%), Query Frame = 2 
Query:  203 EKRGPGNVNLLASPASMGSVCQKS-SVIKERNYMGLXXXXXXXXXXXXXXXXXXXXXXLNLKATELRLGLPGSQSPERGSELCLLGPAQLGEKPLFPLHPTNDS-HYPSQKNVVSGNKRGFSDAMDGFSEGK--YLSSSELLSPRAAPNLGLKSGSIQENL 673
            E+    NV++ +S  +   + + +   +KE NY+GL                      ++LKATEL LGLPGSQSP R +EL LL PA+L EKP FPL P+ D     SQKN  SGNKRGFSD MD F+E K    +    + P AA    +    + +N+
Sbjct:    4 EEELQSNVSVASSSPTSNCISRNTLGGLKEHNYLGLSDCSSVGSSTLSPLAEDDKAT-ISLKATELTLGLPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNASGNKRGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNI 163
[Close]
BLAST of CK937716 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.442e-16
Identity = 53/106 (50.00%), Postives = 59/106 (55.66%), Query Frame = 2 
Query:  272 SSVIKERNYMGLXXXXXXXXXXXXXXXXXXXXXXLNLKATELRLGLPGSQSPERGSELCLLGPAQLGEKPLFPLHPTND--SHYPSQKNVVSGNKRGFSDAMDGFS 583
            S  +KERNY+GL                      LN KATELRLGLP SQSPER ++  LL P    EK LFPL P+ D  S     KNVVSGNKRGF+D  D FS
Sbjct:   16 SPCLKERNYLGLSDCSSVDSSTIPNVVGKSN---LNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGNKRGFADTWDEFS 118
The following BLAST results are available for this feature:
BLAST of CK937716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IAA9_ARATH1.259e-1939.13Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA8_ARATH8.442e-1650.00Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004482_G01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937716 ID=CK937716; Name=CK937716; organism=Citrus sinensis; type=EST; length=806bp
GGGGGAAGCTTTTGTTGCTCTGTGCCAAATGGAGGGTCCTTAGCTCTTTC
TCTCTCTTTCTCTTCTCTCTCAAGTCTGAAGTCTCAGCTTTGCAAATCTT
CTACTTCTTCTCCGGCAAGTGATCAACAAAACCAACCAGGTTGTACGGAA
TTAAAGTATCAGATTTTAGATTTTGATGTCTCCACCACCTGCTGTTGGTG
AGGAGAAGAGGGGTCCTGGCAATGTCAATTTACTGGCTTCTCCAGCCTCC
ATGGGCAGCGTATGCCAAAAAAGCTCGGTAATAAAAGAGCGTAACTACAT
GGGATTATCAGACTCTTCTTCAATGGACAGCTCAGTGGTCTCCAGTGTCT
CTGGTGAGAGTAGCAAGAGCAGTCTGAATCTCAAGGCTACAGAGCTGAGG
CTCGGACTTCCTGGGTCCCAGTCTCCAGAGAGAGGTTCGGAACTCTGCCT
CCTAGGTCCTGCGCAACTGGGTGAGAAGCCATTGTTCCCTTTGCATCCAA
CAAATGATAGCCACTACCCATCACAGAAGAATGTTGTTTCTGGAAACAAA
AGGGGGTTCTCTGATGCTATGGATGGGTTCTCAGAGGGGAAATATCTTTC
TAGTTCTGAGCTATTGTCACCCAGGGCTGCTCCAAACTTGGGGCTGAAGT
CAGGTTCTATTCAAGAGAACCTTGGGCCTCAAACCGCTAAAGGCAAAGAG
ATGGCCAACCAAAAAGCAGTGCAGGAAAGGCCTCATGCTAACAATGAGAC
CATAACAAACCATAATGGTTCTGCAAGTAACAGTAGCAGTGCACCTGCTG
CCAAGG
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