FC921780

Overview
NameFC921780
Unique NameFC921780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length283
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12023 contig Csv1_Contig12023:198..479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.909e-36
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187
            M GACGYGNLY +GYGTNTAALSTALFNNG+SCGACFEI+C ND +WC PGSI VTATNFCP
Sbjct:   44 MGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCP 105          

HSP 2 Score: 51.9878 bits (123), Expect = 1.909e-36
Identity = 20/22 (90.91%), Postives = 22/22 (100.00%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPPQQHFDLSQPVF++IA
Sbjct:  115 GGWCNPPQQHFDLSQPVFQRIA 136          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.913e-34
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPG--SIFVTATNFCPSK*CSP 205
            M GACGYGNLY +GYGTNTAALST+LFN+G SCGACFEI+CVNDP+WC PG  S+FVTATNFCP     P
Sbjct:   51 MGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQP 120          

HSP 2 Score: 43.5134 bits (101), Expect = 4.913e-34
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP+ HFDL+ PVF +IA
Sbjct:  124 GGWCNPPRSHFDLAMPVFLKIA 145          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.916e-34
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187
            M GACGYGNLY +GYGT+TAALSTALFNNG+SCG+CFEI+C ND +WC PGSI VTATNFCP
Sbjct:   43 MGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNFCP 104          

HSP 2 Score: 46.9802 bits (110), Expect = 4.916e-34
Identity = 17/22 (77.27%), Postives = 21/22 (95.45%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP +HFDL+QPVF++IA
Sbjct:  114 GGWCNPPLEHFDLAQPVFQRIA 135          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 6.402e-34
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187
            M GACGYGNLY +GYGTNTAALSTALFNNG+SCGACFEI+C +D  WC PG+I VTATNFCP
Sbjct:   47 MGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCP 108          

HSP 2 Score: 47.3654 bits (111), Expect = 6.402e-34
Identity = 18/22 (81.82%), Postives = 20/22 (90.91%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP  HFDLSQPVF++IA
Sbjct:  118 GGWCNPPLHHFDLSQPVFQRIA 139          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.399e-33
Identity = 52/70 (74.29%), Postives = 57/70 (81.43%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPG--SIFVTATNFCPSK*CSP 205
            M GACGYGNLY +GYGTNTAALSTALFNNGMSCGACFE++C NDP+WC  G  SI +TATNFCP     P
Sbjct:   48 MGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQP 117          

HSP 2 Score: 44.2838 bits (103), Expect = 2.399e-33
Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP++HFDL+ PVF +IA
Sbjct:  121 GGWCNPPREHFDLAMPVFLKIA 142          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.990e-33
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187
            M GACGYGNLY +GYGTNTAALSTALFN G SCGACF+I+CV+DP+WC  G+I VT TNFCP
Sbjct:   46 MGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNFCP 107          

HSP 2 Score: 46.595 bits (109), Expect = 8.990e-33
Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPPQ HFDL+QP+F +IA
Sbjct:  117 GGWCNPPQHHFDLAQPIFLRIA 138          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.524e-32
Identity = 53/70 (75.71%), Postives = 56/70 (80.00%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPG--SIFVTATNFCPSK*CSP 205
            M GACGYGNLY +GYG NTAALSTALFNNG SCGACFEI+C +DPRWC PG  SI VTATNFCP     P
Sbjct:   53 MGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQP 122          

HSP 2 Score: 41.5874 bits (96), Expect = 1.524e-32
Identity = 14/21 (66.67%), Postives = 19/21 (90.48%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP++HFDL+ P+F +I
Sbjct:  126 GGWCNPPREHFDLAMPMFLKI 146          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.367e-32
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPG--SIFVTATNFCP 187
            M GACGYGNLY +GYG NTAALSTALFNNG+SCG+CFE++C+NDP WC PG  SI +TATNFCP
Sbjct:   49 MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCP 112          

HSP 2 Score: 42.743 bits (99), Expect = 3.367e-32
Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP++HFDL+ P+F  IA
Sbjct:  122 GGWCNPPREHFDLAMPMFLSIA 143          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 9.685e-32
Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPG--SIFVTATNFCPSK*CSP 205
            M GACGYGNLY +GYG NTAALSTALFNNG SCGACFE++C +DP+WC  G  SIF+TATNFCP     P
Sbjct:   48 MGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQP 117          

HSP 2 Score: 41.9726 bits (97), Expect = 9.685e-32
Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP+ HFDL+ P+F +IA
Sbjct:  121 GGWCNPPRPHFDLAMPMFLKIA 142          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 9.688e-32
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187
            M GACGYGNLY +GYGTNTAALSTALFNNG++CGAC+E++C +DPRWC   +I VTATNFCP
Sbjct:   47 MGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCP 108          

HSP 2 Score: 45.0542 bits (105), Expect = 9.688e-32
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP QHFDL++P F QIA
Sbjct:  118 GGWCNPPLQHFDLAEPAFLQIA 139          
The following BLAST results are available for this feature:
BLAST of FC921780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA1_ARATH1.909e-3683.87Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP16_ARATH4.913e-3475.71Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXP10_ARATH4.916e-3480.65Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXP15_ARATH6.402e-3480.65Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA4_ARATH2.399e-3374.29Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP14_ARATH8.990e-3377.42Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA3_ARATH1.524e-3275.71Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA9_ARATH3.367e-3276.56Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA6_ARATH9.685e-3271.43Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA8_ARATH9.688e-3275.81Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC06052C04T7 RindPdigS Citrus sinensis cDNA clone C06052C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921780 ID=FC921780; Name=FC921780; organism=Citrus sinensis; type=EST; length=283bp
CATGGATGGCGCTTGTGGGTATGGAAACTTATACCGCGAGGGATATGGGA
CAAACACCGCAGCTCTGAGCACTGCGCTTTTCAACAATGGCATGAGCTGT
GGGGCTTGTTTTGAGATCCAGTGTGTTAATGACCCAAGATGGTGCCCTCC
GGGCTCCATTTTTGTTACTGCCACAAATTTTTGCCCCTCCAAATAATGCT
CCCCCAAACAATGCCGGTGGCTGGTGCAATCCTCCCCAGCAACATTTTGA
CCTCTCTCAGCCTGTGTTTGAACAAATTGCTCA
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