CX675358
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX675358 vs. ExPASy Swiss-Prot
Match: RPB11_ARATH (DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis thaliana GN=RPB13.6 PE=2 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.626e-53 Identity = 101/116 (87.07%), Postives = 111/116 (95.69%), Query Frame = -3 Query: 317 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAKHSRVY 664 MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAGY+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD LK+ FEAE+AK S + Sbjct: 1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116
BLAST of CX675358 vs. ExPASy Swiss-Prot
Match: RPB11_DICDI (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum GN=polr2j PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.533e-27 Identity = 53/115 (46.09%), Postives = 87/115 (75.65%), Query Frame = -3 Query: 320 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAKHSRV 664 MNAPDR+E FV+P+G KKV+ RDTKI NA+ FTI +E+HTIGN++RMQL D++++FAGY++PHPL++ + +RI T + ++P++ +++ L +E +L+++F ++ K V Sbjct: 1 MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQKKRNV 115
BLAST of CX675358 vs. ExPASy Swiss-Prot
Match: RPB11_MOUSE (DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus GN=Polr2j PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.824e-27 Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = -3 Query: 338 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAEL 664 MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAGYK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F + Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRGAI 109
BLAST of CX675358 vs. ExPASy Swiss-Prot
Match: RPB11_HUMAN (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens GN=POLR2J PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.824e-27 Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = -3 Query: 338 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAEL 664 MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAGYK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F + Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAI 109
BLAST of CX675358 vs. ExPASy Swiss-Prot
Match: RPB11_BOVIN (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus GN=POLR2J PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.824e-27 Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = -3 Query: 338 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAEL 664 MNAP +E F++ EG KK++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAGYK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F + Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAI 109
BLAST of CX675358 vs. ExPASy Swiss-Prot
Match: RPB11_DROME (DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster GN=Rpb11 PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 7.607e-27 Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = -3 Query: 347 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 664 MNAP +E F++ EG KK+ E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAGYK+PHPL++K ++RI TT+ SP +A+ AI DL EL + F+ Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFK 106
BLAST of CX675358 vs. ExPASy Swiss-Prot
Match: RPB11_ANOGA (DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae GN=Rpb11 PE=3 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 2.891e-26 Identity = 56/105 (53.33%), Postives = 76/105 (72.38%), Query Frame = -3 Query: 350 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 664 MNAP +E F++ EG KK+ E D K+ NAA FT+ +E+HT+GN++R QL +D NVLFAGYKLPHPL++K ++RI TTS+ SP +A+ AI DL EL + F Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERF 105
BLAST of CX675358 vs. ExPASy Swiss-Prot
Match: RPB1B_HUMAN (DNA-directed RNA polymerase II subunit RPB11-b1 OS=Homo sapiens GN=POLR2J2 PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 4.174e-25 Identity = 54/105 (51.43%), Postives = 76/105 (72.38%), Query Frame = -3 Query: 350 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 664 MNAP +E F++ EG +K++ +DTK+ NA FTI +E+HT+GNI++ QL +D VLFAGYK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F Sbjct: 1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104
BLAST of CX675358 vs. ExPASy Swiss-Prot
Match: RPB1C_HUMAN (DNA-directed RNA polymerase II subunit RPB11-b2 OS=Homo sapiens GN=POLR2J3 PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 9.299e-25 Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = -3 Query: 350 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAF 664 MNAP +E F++ EG +K++ +DTK+ NA FT+ +E+HT+GNI++ QL +D VLFAGYK+PHPL++KII+R+ TT SP +A+ AI DL EL L+ F Sbjct: 1 MNAPPAFESFLLFEG-EKITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104
BLAST of CX675358 vs. ExPASy Swiss-Prot
Match: RPB11_CAEBR (Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis briggsae GN=CBG20834 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.290e-23 Identity = 53/111 (47.75%), Postives = 79/111 (71.17%), Query Frame = -3 Query: 332 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAK 664 MNAP +E F++ + KK+ E+DTK+ NAA FTI +E+HT+GN+L++QL +D VLFAGYK PHPL++KI++R+ TT+ ++P A AI DL EL L+ ++ + K Sbjct: 1 MNAPAAFESFLLLDD-KKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLEHRIDSAIKK 110 The following BLAST results are available for this feature:
BLAST of CX675358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675358 ID=CX675358; Name=CX675358; organism=Citrus sinensis; type=EST; length=777bpback to top |