CX675357

Overview
NameCX675357
Unique NameCX675357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length517
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6299 contig Csv1_Contig6299:706..1222. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675357 vs. ExPASy Swiss-Prot
Match: IDI2_CLABR (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 7.035e-33
Identity = 64/74 (86.49%), Postives = 71/74 (95.95%), Query Frame = 3
Query:    3 DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
            DV+V+PNPDEVAE KYVNREQLKELL+KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E +DMK+IHKL
Sbjct:  213 DVAVHPNPDEVAEIKYVNREQLKELLKKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKSIHKL 286          
BLAST of CX675357 vs. ExPASy Swiss-Prot
Match: IDI1_CAMAC (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.035e-33
Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 3
Query:    3 DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
            DV+VNPNPDEVA+ KYV R+QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDH+EKGT++E  DMK+IHKL
Sbjct:  161 DVNVNPNPDEVADIKYVTRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEKGTMHEAADMKSIHKL 234          
BLAST of CX675357 vs. ExPASy Swiss-Prot
Match: IDI2_CLAXA (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.567e-32
Identity = 63/74 (85.14%), Postives = 69/74 (93.24%), Query Frame = 3
Query:    3 DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
            DV ++PNPDEVA+ KYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E +DMKTIH L
Sbjct:  217 DVGIHPNPDEVADIKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKTIHNL 290          
BLAST of CX675357 vs. ExPASy Swiss-Prot
Match: IDI2_CAMAC (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.560e-32
Identity = 61/75 (81.33%), Postives = 70/75 (93.33%), Query Frame = 3
Query:    3 DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 227
            DV+V+PNPDEVA+ KYVN++QLK+LLRK DAGEEGLKLSPWFRLVV+NFLFKWWDH+EKGTL +  DMKTIHKLT
Sbjct:  235 DVNVHPNPDEVADVKYVNQDQLKDLLRKVDAGEEGLKLSPWFRLVVENFLFKWWDHVEKGTLQDATDMKTIHKLT 309          
BLAST of CX675357 vs. ExPASy Swiss-Prot
Match: IDI2_ARATH (Isopentenyl-diphosphate Delta-isomerase II OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.955e-32
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = 3
Query:    3 DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
            DV V PNPDEVAE KYV+RE+LKEL++KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL E IDMKTIHKL
Sbjct:  211 DVKVQPNPDEVAEIKYVSREELKELVKKADAGEEGLKLSPWFRLVVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284          
BLAST of CX675357 vs. ExPASy Swiss-Prot
Match: IDI1_CLABR (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.467e-30
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 3
Query:    3 DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
            DV+++PNPDEVAE KY+NR+ LKELLRKADA EEG+KLSPWFRLVVDNFLFKWWDH+EKG+L +  DMKTIHKL
Sbjct:  214 DVNLDPNPDEVAEVKYMNRDDLKELLRKADAEEEGVKLSPWFRLVVDNFLFKWWDHVEKGSLKDAADMKTIHKL 287          
BLAST of CX675357 vs. ExPASy Swiss-Prot
Match: IDI1_ARATH (Isopentenyl-diphosphate Delta-isomerase I OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 9.508e-30
Identity = 57/74 (77.03%), Postives = 66/74 (89.19%), Query Frame = 3
Query:    3 DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
            DV + PNPDEVAE KYV+RE+LKEL++KADAG+E +KLSPWFRLVVDNFL KWWDH+EKGT+ E  DMKTIHKL
Sbjct:  160 DVKLQPNPDEVAEIKYVSREELKELVKKADAGDEAVKLSPWFRLVVDNFLMKWWDHVEKGTITEAADMKTIHKL 233          
BLAST of CX675357 vs. ExPASy Swiss-Prot
Match: IDI1_MESAU (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.056e-16
Identity = 36/74 (48.65%), Postives = 60/74 (81.08%), Query Frame = 3
Query:    3 DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
            +V++NP+P+E+  Y YV++E+LKEL++KA +GE  +KL+PWF+++VD FLFKWWD+L    L++ +D + IH++
Sbjct:  158 NVTLNPDPNEIKSYCYVSKEELKELVKKAASGE--VKLTPWFKIIVDTFLFKWWDNLNH--LSQFVDHEKIHRM 227          
BLAST of CX675357 vs. ExPASy Swiss-Prot
Match: IDI1_PONAB (Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.333e-15
Identity = 34/74 (45.95%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
            +V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF+++ + FLFKWWD+L    LN+ +D + I+++
Sbjct:  158 NVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAETFLFKWWDNLNH--LNQFVDHEKIYRI 227          
BLAST of CX675357 vs. ExPASy Swiss-Prot
Match: IDI1_MOUSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.274e-15
Identity = 34/74 (45.95%), Postives = 58/74 (78.38%), Query Frame = 3
Query:    3 DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 224
            +V++NP+P+E+  Y YV++E+++E+L+KA +GE  +KL+PWF+++ D FLFKWWD+L    L+  +D + IH+L
Sbjct:  158 NVTLNPDPNEIKSYCYVSKEEVREILKKAASGE--IKLTPWFKIIADTFLFKWWDNLNH--LSPFVDHEKIHRL 227          
The following BLAST results are available for this feature:
BLAST of CX675357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
IDI2_CLABR7.035e-3386.49Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI1_CAMAC7.035e-3385.14Isopentenyl-diphosphate Delta-isomerase I OS=Campt... [more]
IDI2_CLAXA1.567e-3285.14Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CAMAC4.560e-3281.33Isopentenyl-diphosphate Delta-isomerase II OS=Camp... [more]
IDI2_ARATH5.955e-3285.14Isopentenyl-diphosphate Delta-isomerase II OS=Arab... [more]
IDI1_CLABR1.467e-3079.73Isopentenyl-diphosphate Delta-isomerase I OS=Clark... [more]
IDI1_ARATH9.508e-3077.03Isopentenyl-diphosphate Delta-isomerase I OS=Arabi... [more]
IDI1_MESAU2.056e-1648.65Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesoc... [more]
IDI1_PONAB1.333e-1545.95Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo... [more]
IDI1_MOUSE2.274e-1545.95Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_61G02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61G02-N3-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675357 ID=CX675357; Name=CX675357; organism=Citrus sinensis; type=EST; length=517bp
GAGATGTTAGTGTTAACCCAAATCCTGATGAAGTAGCCGAGTATAAATAT
GTCAACCGGGAACAGTTAAAAGAGCTTTTGAGGAAAGCAGATGCTGGAGA
AGAAGGTTTGAAGCTGTCTCCTTGGTTCAGACTGGTTGTGGACAATTTCT
TGTTCAAGTGGTGGGATCACCTCGAAAAAGGTACCCTTAACGAAGTCATT
GACATGAAGACCATTCACAAGTTGACTTAATAAAGCCGCAGGCCCTTGAA
ACACAGTATTTGTGTGCCGGAACCTGTATTCCAATAAGTTTGGGCATTTG
AGAGTTCTTCAAGACATTAAGGGTACACAGTATCTTCTCACCGGTTTCTT
TATTCCAATAAATTTGGATATGCGAGAGTTCTACACAGATTAGCATTTTG
TTGTTGACGTTACCTTATCTTTTCGTATGTGCTGCTTTTATGGAATTTTA
TTGTTAAGTTTGTAATTTTGACATTACATATGGTTTAGTAAAAAAATAAA
AATCTGCTTCTTCTATT
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