CK937680

Overview
NameCK937680
Unique NameCK937680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length305
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937680 vs. ExPASy Swiss-Prot
Match: CCSA_CITSI (Cytochrome c biogenesis protein ccsA OS=Citrus sinensis GN=ccsA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.389e-38
Identity = 80/91 (87.91%), Postives = 80/91 (87.91%), Query Frame = -2
Query:    5 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDF 277
            MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYE           IHKIFDF
Sbjct:    1 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYESLIFLSWSLSIIHKIFDF 91          
BLAST of CK937680 vs. ExPASy Swiss-Prot
Match: CCSA_EUCGG (Cytochrome c biogenesis protein ccsA OS=Eucalyptus globulus subsp. globulus GN=ccsA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.709e-27
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = -2
Query:   59 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYE 277
            MIFSTLE ILTHISFS++SI ITI+LI+  VDEI GLY SSE+GMTAT FC+TGLL+TRW+YS HFPLSDLYE
Sbjct:    1 MIFSTLEHILTHISFSIISIVITIFLISLSVDEIVGLYDSSEKGMTATFFCITGLLVTRWIYSGHFPLSDLYE 73          
BLAST of CK937680 vs. ExPASy Swiss-Prot
Match: CCSA_PANGI (Cytochrome c biogenesis protein ccsA OS=Panax ginseng GN=ccsA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.312e-26
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = -2
Query:   59 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYE 277
            MIFSTLE ILTHISFS+VSI ITI+LIT LVDEI  LY SSE+GM A   C+TGLL+TRW+YSRHFPLSDLYE
Sbjct:    1 MIFSTLEHILTHISFSIVSIVITIHLITLLVDEIIKLYDSSEKGMIAIFLCITGLLVTRWIYSRHFPLSDLYE 73          
BLAST of CK937680 vs. ExPASy Swiss-Prot
Match: CCSA_VITVI (Cytochrome c biogenesis protein ccsA OS=Vitis vinifera GN=ccsA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.244e-26
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = -2
Query:   59 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYE 277
            MIFSTLE ILTHISFSVVSI ITI+LIT LVDEI GL  SSE+GM AT FC+TGLL+TRW+Y  HFPLSDLYE
Sbjct:    1 MIFSTLEHILTHISFSVVSIVITIHLITLLVDEIVGLSDSSEKGMIATFFCITGLLVTRWIYLGHFPLSDLYE 73          
BLAST of CK937680 vs. ExPASy Swiss-Prot
Match: CCSA_SOLLC (Cytochrome c biogenesis protein ccsA OS=Solanum lycopersicum GN=ccsA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.399e-25
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = -2
Query:   59 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYE 277
            MIFSTLE ILTHISFS+VSI ITI+LITFLVDEI  LY SSE+G+  T FC+TGLL+TRWV S HFPLSDLYE
Sbjct:    1 MIFSTLEHILTHISFSIVSIVITIHLITFLVDEIVKLYDSSEKGIIVTFFCITGLLVTRWVSSGHFPLSDLYE 73          
BLAST of CK937680 vs. ExPASy Swiss-Prot
Match: CCSA_TOBAC (Cytochrome c biogenesis protein ccsA OS=Nicotiana tabacum GN=ccsA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.133e-25
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = -2
Query:   59 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYE 277
            MIFSTLE ILTHISFS+VSI ITI+LITFLVDEI  LY SSE+G+  T FC+TGLL+TRW+ S HFPLSDLYE
Sbjct:    1 MIFSTLEHILTHISFSIVSIVITIHLITFLVDEIVKLYDSSEKGIIVTFFCITGLLVTRWISSGHFPLSDLYE 73          
BLAST of CK937680 vs. ExPASy Swiss-Prot
Match: CCSA_SOLTU (Cytochrome c biogenesis protein ccsA OS=Solanum tuberosum GN=ccsA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.133e-25
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = -2
Query:   59 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYE 277
            MIFSTLE ILTHISFS+VSI ITI+LITFLVDEI  LY SSE+G+  T FC+TGLL+TRW+ S HFPLSDLYE
Sbjct:    1 MIFSTLEHILTHISFSIVSIVITIHLITFLVDEIVKLYDSSEKGIIVTFFCITGLLVTRWISSGHFPLSDLYE 73          
BLAST of CK937680 vs. ExPASy Swiss-Prot
Match: CCSA_SOLBU (Cytochrome c biogenesis protein ccsA OS=Solanum bulbocastanum GN=ccsA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.133e-25
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = -2
Query:   59 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYE 277
            MIFSTLE ILTHISFS+VSI ITI+LITFLVDEI  LY SSE+G+  T FC+TGLL+TRW+ S HFPLSDLYE
Sbjct:    1 MIFSTLEHILTHISFSIVSIVITIHLITFLVDEIVKLYDSSEKGIIVTFFCITGLLVTRWISSGHFPLSDLYE 73          
BLAST of CK937680 vs. ExPASy Swiss-Prot
Match: CCSA_NICSY (Cytochrome c biogenesis protein ccsA OS=Nicotiana sylvestris GN=ccsA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.133e-25
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = -2
Query:   59 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYE 277
            MIFSTLE ILTHISFS+VSI ITI+LITFLVDEI  LY SSE+G+  T FC+TGLL+TRW+ S HFPLSDLYE
Sbjct:    1 MIFSTLEHILTHISFSIVSIVITIHLITFLVDEIVKLYDSSEKGIIVTFFCITGLLVTRWISSGHFPLSDLYE 73          
BLAST of CK937680 vs. ExPASy Swiss-Prot
Match: CCSA_ATRBE (Cytochrome c biogenesis protein ccsA OS=Atropa belladonna GN=ccsA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.133e-25
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = -2
Query:   59 MIFSTLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYE 277
            MIFSTLE ILTHISFS+VSI ITI+LITFLVDEI  LY SSE+G+  T FC+TGLL+TRW+ S HFPLSDLYE
Sbjct:    1 MIFSTLEHILTHISFSIVSIVITIHLITFLVDEIVKLYDSSEKGIIVTFFCITGLLVTRWISSGHFPLSDLYE 73          
The following BLAST results are available for this feature:
BLAST of CK937680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
CCSA_CITSI9.389e-3887.91Cytochrome c biogenesis protein ccsA OS=Citrus sin... [more]
CCSA_EUCGG5.709e-2778.08Cytochrome c biogenesis protein ccsA OS=Eucalyptus... [more]
CCSA_PANGI6.312e-2678.08Cytochrome c biogenesis protein ccsA OS=Panax gins... [more]
CCSA_VITVI8.244e-2679.45Cytochrome c biogenesis protein ccsA OS=Vitis vini... [more]
CCSA_SOLLC2.399e-2578.08Cytochrome c biogenesis protein ccsA OS=Solanum ly... [more]
CCSA_TOBAC3.133e-2576.71Cytochrome c biogenesis protein ccsA OS=Nicotiana ... [more]
CCSA_SOLTU3.133e-2576.71Cytochrome c biogenesis protein ccsA OS=Solanum tu... [more]
CCSA_SOLBU3.133e-2576.71Cytochrome c biogenesis protein ccsA OS=Solanum bu... [more]
CCSA_NICSY3.133e-2576.71Cytochrome c biogenesis protein ccsA OS=Nicotiana ... [more]
CCSA_ATRBE3.133e-2576.71Cytochrome c biogenesis protein ccsA OS=Atropa bel... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004777_C11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937680 ID=CK937680; Name=CK937680; organism=Citrus sinensis; type=EST; length=305bp
GGGTAAAATCAAAAATCTTATGAATAATAGATAAACTCCATGAAAGAAAG
ATTAATGATTCATATAAATCACTTAATGGGAAATGTCTCGAGTAAACCCA
ACGGGTGATTAATAATCCTGTTAGACAGAAAGCGGTAGCTGTCATCCCCC
TTTCTGATGAAGCATATAGCCCTCTGATTTCATCGACTAAGAAGGTTATT
AAATAAATTGTAATTCCAATTGAAACGACCGAAAAGGATATATGCGTTAA
TATACGCTCCAAAGTTGAAAATATCATAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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