CK937647

Overview
NameCK937647
Unique NameCK937647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length338
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13773 contig Csv1_Contig13773:207..544. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937647 vs. ExPASy Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.715e-28
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1
Query:    1 AGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 168
            +GYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS
Sbjct:   48 SGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 103          
BLAST of CK937647 vs. ExPASy Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.072e-25
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 1
Query:    1 AGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 168
            +GYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTS
Sbjct:   48 SGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTS 103          
BLAST of CK937647 vs. ExPASy Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 1.958e-19
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 AGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 168
            +GYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG +
Sbjct:   48 SGYGGQTKPVFHKKAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAA 103          
BLAST of CK937647 vs. ExPASy Swiss-Prot
Match: RL44_CHLRE (60S ribosomal protein L44 OS=Chlamydomonas reinhardtii GN=RPL44 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.441e-19
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 1
Query:    1 AGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK 153
            +GYGGQTKPVFHKKAKTTKKIVLR+QCQ CK      +KRCKHFEIGGDKK
Sbjct:   46 SGYGGQTKPVFHKKAKTTKKIVLRMQCQECKQTCMKGLKRCKHFEIGGDKK 96          
BLAST of CK937647 vs. ExPASy Swiss-Prot
Match: RL44_CANGY (60S ribosomal protein L44 OS=Candida glycerinogenes GN=RPL44 PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 7.441e-19
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    1 AGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 168
            +GYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK KG +
Sbjct:   48 SGYGGQTKPVFHKKAKTTKKVVLRLECVACKTKLQLSLKRCKHFELGGDKKQKGAA 103          
BLAST of CK937647 vs. ExPASy Swiss-Prot
Match: RL44_PICJA (60S ribosomal protein L44 OS=Pichia jadinii GN=RPL44 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.719e-19
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 1
Query:    1 AGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 162
            +GYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:   48 SGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKG 101          
BLAST of CK937647 vs. ExPASy Swiss-Prot
Match: RL44_COPCI (60S ribosomal protein L44 OS=Coprinopsis cinerea GN=RPL44 PE=3 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 9.719e-19
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 AGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 168
            +GYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KG +
Sbjct:   48 SGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAA 103          
BLAST of CK937647 vs. ExPASy Swiss-Prot
Match: RL44_COPC7 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPL44 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.719e-19
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 AGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 168
            +GYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KG +
Sbjct:   48 SGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAA 103          
BLAST of CK937647 vs. ExPASy Swiss-Prot
Match: RL44_CAEEL (60S ribosomal protein L44 OS=Caenorhabditis elegans GN=rpl-41 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.719e-19
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1
Query:    1 AGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 162
            +G+GGQTKP+F KKAKTTKKIVLR++C  CKH  Q PIKRCKHFE+GG KK +G
Sbjct:   47 SGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRG 100          
BLAST of CK937647 vs. ExPASy Swiss-Prot
Match: RL44_DEBHA (60S ribosomal protein L44 OS=Debaryomyces hansenii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.269e-18
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    4 GYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 162
            GYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:   49 GYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDKKQKG 101          
The following BLAST results are available for this feature:
BLAST of CK937647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RL44_GOSHI6.715e-2898.2160S ribosomal protein L44 OS=Gossypium hirsutum GN... [more]
RL36A_ARATH1.072e-2592.8660S ribosomal protein L36a OS=Arabidopsis thaliana... [more]
RL44_PHARH1.958e-1973.2160S ribosomal protein L44 OS=Phaffia rhodozyma GN=... [more]
RL44_CHLRE7.441e-1980.3960S ribosomal protein L44 OS=Chlamydomonas reinhar... [more]
RL44_CANGY7.441e-1973.2160S ribosomal protein L44 OS=Candida glycerinogene... [more]
RL44_PICJA9.719e-1975.9360S ribosomal protein L44 OS=Pichia jadinii GN=RPL... [more]
RL44_COPCI9.719e-1971.4360S ribosomal protein L44 OS=Coprinopsis cinerea G... [more]
RL44_COPC79.719e-1971.4360S ribosomal protein L44 OS=Coprinopsis cinerea (... [more]
RL44_CAEEL9.719e-1972.2260S ribosomal protein L44 OS=Caenorhabditis elegan... [more]
RL44_DEBHA1.269e-1877.3660S ribosomal protein L44 OS=Debaryomyces hansenii... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004777_H12 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937647 ID=CK937647; Name=CK937647; organism=Citrus sinensis; type=EST; length=338bp
GCTGGCTATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAGGCTAAGAC
CACCAAGAAGATTGTGCTGAGGCTCCAATGCCAGGGTTGCAAGCATGTGT
CTCAACATCCCATCAAGAGGTGCAAGCACTTTGAAATTGGTGGAGACAAG
AAGGGAAAGGGAACATCTCTTTTCTAGATGCCTTTATTTTTGTTTGTATG
CTTTTTACTTTGCTGCACTTGATGGAACTTTACCCAGTATGGGAATATTT
GTTTTAGTTTTGTTGGGTTAGTTTGATGCTGTTAATTTAAAACTTGAAGC
GGTTGTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top