CK937639

Overview
NameCK937639
Unique NameCK937639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2045 contig Csv1_Contig2045:1..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK937639 vs. ExPASy Swiss-Prot
Match: PRT1_ARATH (E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana GN=PRT1 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.028e-35
Identity = 86/197 (43.65%), Postives = 116/197 (58.88%), Query Frame = 3 
Query:  261 LTVKSN-AEPEKISYSFRCCICLDLLYKPIVLSCGHISCFWCVHRSMNMLRESHCPICRRPYNHFPSICVMLHRLLLKMYPIAYKMREIEIQEDERRYDFFSPQLDNHACGPLVDNECHHLNDSMQFSRIFCGSSSKTGSHENMEQLESVSVAMNNGTSEQSSIEGITVAGKKLPPNEL---NHNXKQISIVDVLCT 839
            +T+K++ ++ E+I   F CC+CL+LLYKPIVLSCGH+SCFWCVH+SMN  RESHCPICR PY HFPS+C  L+ LL KMYP+A+K RE ++ ++E+  + FSPQ+D      LV +      DS+  S        K     N   L S S +  +      + E        +  NEL   N   KQIS  D+LC+
Sbjct:    8 ITMKNDESQEEEIPDQFLCCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHCPICRDPYVHFPSVCQKLYFLLKKMYPLAHKKREEQVLKEEQERECFSPQID------LVLDLSVCSGDSLNVS-----DKQKVEECSNAANLLSSSSSRGDIPCIPKNQEPTDAKALNVHENELLKDNKVSKQISKDDLLCS 193
The following BLAST results are available for this feature:
BLAST of CK937639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRT1_ARATH1.028e-3543.65E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004777_H01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937639 ID=CK937639; Name=CK937639; organism=Citrus sinensis; type=EST; length=840bp
GGGATCCCCATATCAACAATTTCATTTCATCANNNCGATAAAGGCTGTCT
CTGTCAATTGCTCATCCGCTAACGAGACAAGAGTAAACACCGTCAAATCC
GTTGTCTGATATCCTAAAGTACACGTGTACGACTGCACTTGCACCGCACC
GAACCGTTCGTCATCCACCCGACGGGATTCTCTCATTTGTCTCTTCCTCT
ATTTCTGCTGATCGATAGTACTCCGTTGAAGCACTTTAAAAAATGGAGGA
TCAGACCGTCCTCACCGTTAAGTCTAATGCCGAACCGGAGAAAATCTCCT
ACTCATTCCGTTGTTGTATTTGTTTGGATCTTCTGTACAAACCGATAGTG
CTATCTTGTGGTCACATTTCATGTTTCTGGTGTGTCCATAGATCGATGAA
TATGCTACGTGAGTCACACTGTCCAATTTGTAGGCGCCCATATAATCACT
TCCCAAGCATTTGTGTGATGCTTCATCGGTTGCTTTTGAAGATGTATCCG
ATTGCTTATAAGATGAGGGAAATAGAGATCCAAGAGGATGAAAGGAGATA
TGACTTCTTCTCACCACAGCTTGATAACCATGCATGTGGACCACTTGTTG
ATAACGAATGTCATCATCTGAATGATTCCATGCAATTCTCTAGAATATTT
TGTGGATCCTCTAGTAAAACGGGGAGTCATGAAAATATGGAGCAATTGGA
GTCTGTTTCAGTGGCTATGAATAATGGCACAAGTGAACAATCCTCTATTG
AGGGTATTACGGTTGCGGGAAAAAAATTGCCTCCAAATGAGCTCAATCAT
AACTNTAAGCAGATCTCGATTGTTGATGTACTATGTACTG
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