CK937634

Overview
NameCK937634
Unique NameCK937634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2044 contig Csv1_Contig2044:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937634 vs. ExPASy Swiss-Prot
Match: SOX_ARATH (Probable sarcosine oxidase OS=Arabidopsis thaliana GN=At2g24580 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.136e-66
Identity = 124/169 (73.37%), Postives = 146/169 (86.39%), Query Frame = 2
Query:  155 MEFSGEN-FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPEN*VGVTTELGGVIKPTKAVSMFQTLAIKNGA 658
            ME+S +  FDVIVVGAG+MGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYY+ MV ES+ LW  AQSEIGYKV+F   QFDMGP++ +SL SV+A+C+K+ + H+V+D   V + +SGRI IPEN +GV+TELGG+IKPTKAVSMFQTLAI +GA
Sbjct:    1 MEYSDDGRFDVIVVGAGVMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYYSMVSESTRLWAAAQSEIGYKVHFPTQQFDMGPADQQSLLSVVATCQKHGLAHRVMDSHAVSEHFSGRISIPENWIGVSTELGGIIKPTKAVSMFQTLAIGHGA 169          
BLAST of CK937634 vs. ExPASy Swiss-Prot
Match: SOX_BOVIN (Peroxisomal sarcosine oxidase OS=Bos taurus GN=PIPOX PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 8.211e-26
Identity = 64/155 (41.29%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  170 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPEN*VGVTTELGGVIKPTKAVSMFQ 634
            E +D IV+GAGI G   AY LAK  +K LLLEQF   H RGSSHG+SR IR  YPED+Y  M+ E   LW Q + E G ++Y +     +G  EN  L+ + A+  +  V HQ L   ++ Q++   I +    VG+    GGV+   KA+   Q
Sbjct:    6 ELYDAIVIGAGIQGCFTAYHLAKHSKKVLLLEQFFLPHSRGSSHGQSRIIRRAYPEDFYTQMMAECYSLWAQLEHEAGTQLYRQTGLLLLGMKENPELKIIQATLSRQGVEHQCLSSEELKQRFP-NIRLARGEVGLLEVSGGVLYADKALRALQ 159          
BLAST of CK937634 vs. ExPASy Swiss-Prot
Match: SOX_HUMAN (Peroxisomal sarcosine oxidase OS=Homo sapiens GN=PIPOX PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.505e-24
Identity = 61/153 (39.87%), Postives = 88/153 (57.52%), Query Frame = 2
Query:  176 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPEN*VGVTTELGGVIKPTKAVSMFQ 634
            +D IV+GAGI G   AY LAK  ++ LLLEQF   H RGSSHG+SR IR  Y ED+Y  M+ E   +W Q + E G +++ +     +G  EN+ L+++ A+  +  V HQ L   ++ Q++   I +P   VG+    GGVI   KA+   Q
Sbjct:    8 WDAIVIGAGIQGCFTAYHLAKHRKRILLLEQFFLPHSRGSSHGQSRIIRKAYLEDFYTRMMHECYQIWAQLEHEAGTQLHRQTGLLLLGMKENQELKTIQANLSRQRVEHQCLSSEELKQRFP-NIRLPRGEVGLLDNSGGVIYAYKALRALQ 159          
BLAST of CK937634 vs. ExPASy Swiss-Prot
Match: SOX_MOUSE (Peroxisomal sarcosine oxidase OS=Mus musculus GN=Pipox PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.712e-23
Identity = 59/160 (36.88%), Postives = 87/160 (54.37%), Query Frame = 2
Query:  176 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPEN*VGVTTELGGVIKPTKAVSMFQTLAIKNG 655
            +D IV+GAGI G   AY LAK  +  LLLEQF   H RGSSHG+SR IR  YPED+Y  M+ E    W Q + E G +++ +     +G  EN  L+++ A+  +  + H+ L    + Q++   I      VG+  + GGV+   KA+   Q +  + G
Sbjct:    8 WDAIVIGAGIQGCFTAYHLAKHSKSVLLLEQFFLPHSRGSSHGQSRIIRKAYPEDFYTMMMKECYQTWAQLEREAGTQLHRQTELLLLGTKENPGLKTIQATLSRQGIDHEYLSSVDLKQRFP-NIRFTRGEVGLLDKTGGVLYADKALRALQHIICQLG 166          
BLAST of CK937634 vs. ExPASy Swiss-Prot
Match: SOX_RABIT (Peroxisomal sarcosine oxidase OS=Oryctolagus cuniculus GN=PIPOX PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 59/153 (38.56%), Postives = 86/153 (56.21%), Query Frame = 2
Query:  176 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPEN*VGVTTELGGVIKPTKAVSMFQ 634
            +D IV+GAGI G    Y L K  ++ LLLEQF   H RGSSHG+SR IR  Y ED+Y  M+ E   +W Q + E G +++ +     +G  EN+ L+++ A+  +  V HQ L   ++ Q++   I +P   VG+    GGVI   KA+   Q
Sbjct:    8 WDAIVIGAGIQGCFTVYHLVKHRKRILLLEQFFLPHSRGSSHGQSRIIRKAYLEDFYTRMMHECYQIWAQLEHEAGTQLHRQTGLLLLGMKENQELKTIQANLSRQRVEHQCLSSEELKQRFP-NIRLPRGEVGLLDNSGGVIYAYKALRALQ 159          
BLAST of CK937634 vs. ExPASy Swiss-Prot
Match: MSOX_BACB0 (Monomeric sarcosine oxidase OS=Bacillus sp. (strain B-0618) GN=soxA PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.772e-20
Identity = 59/164 (35.98%), Postives = 93/164 (56.71%), Query Frame = 2
Query:  173 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGP-SENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPEN*VGVTTELGGVIKPTKAVSMFQTLAIKNGA 658
            +FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y P+ L S  LW + + E  +K++ K      GP  E+  +   + + +++S+   +L+  ++ +++ G I +PEN   +     GV+     +  ++ LA   GA
Sbjct:    4 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGA 166          
BLAST of CK937634 vs. ExPASy Swiss-Prot
Match: MSOX_BACSN (Monomeric sarcosine oxidase OS=Bacillus sp. (strain NS-129) GN=soxA PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.022e-20
Identity = 56/164 (34.15%), Postives = 92/164 (56.10%), Query Frame = 2
Query:  173 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRS-VIASCRKNSVPHQVLDCRQVLQKYSGRIEIPEN*VGVTTELGGVIKPTKAVSMFQTLAIKNGA 658
            +FDVIVVGAG MG +A Y LAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y P  L +  LW + + E  +K++ +      GP    +  S  + +   +S+ H++ + +Q+  +++G +E+P+N   +     GV+     +  ++ LA  +GA
Sbjct:    4 HFDVIVVGAGSMGMAAGYYLAKQGVKTLLVDSFDPPHTNGSHHGDTRIIRHAYGEGREYVPFALRAQELWYELEKETHHKIFTQTGVLVYGPKGGSAFVSETMEAANIHSLEHELFEGKQLTDRWAG-VEVPDNYEAIFEPNSGVLFSENCIQAYRELAEAHGA 166          
BLAST of CK937634 vs. ExPASy Swiss-Prot
Match: MSOX_ARTST (Monomeric sarcosine oxidase OS=Arthrobacter sp. (strain TE1826) GN=soxA PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.658e-18
Identity = 54/165 (32.73%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  170 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGP-SENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPEN*VGVTTELGGVIKPTKAVSMFQTLAIKNGA 658
            +++DVIVVGAG MG +A Y L+K+G KTLL++ F   H  GS HG++R IR  Y E   Y P  L +  LW + + E  +K++ K      GP  E   +   + + +++S+   +L+  ++ +++ G + +PEN   +  +  GV+     +  ++ LA  NGA
Sbjct:    5 KDYDVIVVGAGSMGMAAGYYLSKQGVKTLLVDSFHPPHTNGSHHGDTRIIRHAYGEGREYVPFALRAQELWYELEKETHHKIFTKTGVLVFGPKGEAPFVAETMEAAKEHSLDVDLLEGSEINKRWPG-VTVPENYNAIFEKNSGVLFSENCIRAYRELAEANGA 168          
BLAST of CK937634 vs. ExPASy Swiss-Prot
Match: MSOX_STRAW (Monomeric sarcosine oxidase OS=Streptomyces avermitilis GN=soxA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.694e-18
Identity = 53/162 (32.72%), Postives = 95/162 (58.64%), Query Frame = 2
Query:  176 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPEN*VGVTTELGGVIKPTKAVSMFQTLAIKNGA 658
            +DVIV+G G MGS+AA+ L+ RG + L LE+F  +H+RGSSHG SR  R +Y ED  Y P++L S  L+E+ +   G +V   +    +G  ++ ++   + S  +  +PH++LD +++ +++   +    + V +  +  G+++P   V+    LA + GA
Sbjct:    5 YDVIVIGLGGMGSAAAHHLSARGARVLGLEKFGPVHNRGSSHGGSRITRQSYFEDPAYVPLLLRSYELYEEVERSTGREVATLSGGVMVGRPDSLTVAGSLRSATQWDLPHEMLDAKEIRRRFP-TLNPSNDEVALYEKKAGLVRPENMVAAHLQLATRQGA 165          
BLAST of CK937634 vs. ExPASy Swiss-Prot
Match: MSOX_STRSB (Monomeric sarcosine oxidase OS=Streptomyces sp. (strain KB210-8SY) GN=soxA PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.833e-17
Identity = 52/162 (32.10%), Postives = 93/162 (57.41%), Query Frame = 2
Query:  176 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPEN*VGVTTELGGVIKPTKAVSMFQTLAIKNGA 658
            +DVIV+G G MGS+AA+ L+ RG + L LE+F  +H+RGSSHG SR  R +Y ED  Y P++L +  L+E+ +   G  V         GP +++++   + S  +  + H++LD +++ +++   +   ++ V +     G+++P   V+    LA + GA
Sbjct:    5 YDVIVIGLGGMGSAAAHHLSARGARVLGLEKFGPVHNRGSSHGGSRITRQSYFEDPAYVPLLLRAYELYEELERATGRNVATLCGGVMAGPPDSRTVSGSLRSATEWDLAHEMLDAKEIRRRFP-TLAPDDDEVALFEAKAGLLRPENMVAAHLQLATRQGA 165          
The following BLAST results are available for this feature:
BLAST of CK937634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
SOX_ARATH2.136e-6673.37Probable sarcosine oxidase OS=Arabidopsis thaliana... [more]
SOX_BOVIN8.211e-2641.29Peroxisomal sarcosine oxidase OS=Bos taurus GN=PIP... [more]
SOX_HUMAN4.505e-2439.87Peroxisomal sarcosine oxidase OS=Homo sapiens GN=P... [more]
SOX_MOUSE1.712e-2336.88Peroxisomal sarcosine oxidase OS=Mus musculus GN=P... [more]
SOX_RABIT3.814e-2338.56Peroxisomal sarcosine oxidase OS=Oryctolagus cunic... [more]
MSOX_BACB01.772e-2035.98Monomeric sarcosine oxidase OS=Bacillus sp. (strai... [more]
MSOX_BACSN3.022e-2034.15Monomeric sarcosine oxidase OS=Bacillus sp. (strai... [more]
MSOX_ARTST1.658e-1832.73Monomeric sarcosine oxidase OS=Arthrobacter sp. (s... [more]
MSOX_STRAW3.694e-1832.72Monomeric sarcosine oxidase OS=Streptomyces avermi... [more]
MSOX_STRSB1.833e-1732.10Monomeric sarcosine oxidase OS=Streptomyces sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_B03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937634 ID=CK937634; Name=CK937634; organism=Citrus sinensis; type=EST; length=660bp
GGGGACAAAGTCATTTCACTCCCTTAGGGGCTGGGTTTTGGATTCGTCAT
GACTGTATTGGGGTTTCACACCCTCGTTTTGTTTTGCCCTAGTCTATGCT
AGGCACGTCTTTCACTCCAAAGCTATCCTGTGAATCTGAAACAGAGTGAA
AATAATGGAATTTTCTGGCGAAAATTTCGATGTAATAGTGGTGGGTGCAG
GCATCATGGGCAGCTCAGCTGCCTACCAACTAGCCAAACGAGGCCAAAAA
ACCCTACTGTTAGAGCAATTCGATTTTTTGCACCACCGTGGCTCCTCACA
CGGCGAGTCACGCACCATTCGAGCTACTTACCCGGAAGATTATTACCACC
CCATGGTCCTTGAGTCTTCTCTTTTATGGGAACAAGCTCAATCTGAAATC
GGCTACAAGGTCTACTTCAAAGCCCATCAGTTCGACATGGGCCCATCTGA
AAACAAGTCTCTACGCTCCGTCATTGCCAGCTGTCGCAAAAATTCGGTCC
CACATCAAGTTCTCGACTGCCGCCAAGTGCTCCAAAAATACTCCGGCAGG
ATTGAGATACCGGAGAATTGAGTCGGTGTCACGACTGAGCTTGGTGGTGT
GATTAAACCCACCAAGGCAGTGTCCATGTTTCAGACACTAGCCATTAAGA
ATGGAGCAGT
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