CK937623

Overview
NameCK937623
Unique NameCK937623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1389 contig Csv1_Contig1389:219..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK937623 vs. ExPASy Swiss-Prot
Match: PST2_ARATH (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.281e-11
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 2 
Query:   80 SMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESNSNGRRELVFXXXXXXXXXXXXXXXXESEEPKRGTPDAKKKYAPVCVTMPTARICR 367
            ++AK P+AT  +R  L VV  + S    ++ +    K++S++  RR+L+F                E EEPKRGT  AKKKYA VCVTMPTA+ICR
Sbjct:   13 AVAKVPSATGGRR--LSVVRASTSDNTPSLEV----KEQSSTTMRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102
[Close]
BLAST of CK937623 vs. ExPASy Swiss-Prot
Match: PST2_GOSHI (Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum GN=PSBT PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.184e-11
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 2 
Query:   68 LLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESNSNGRRELVFXXXXXXXXXXXXXXXXESEEPKRGTPDAKKKYAPVCVTMPTARICR 367
            L  T++ K       +R  L+V   A  ++ E+V M  + K E N NGRRE++F                 + EPKRG+ +AKK YAPVCVTMPTARICR
Sbjct:   11 LSTTNLTKGSPRITQRR--LVVANAAKGAQVESVQMSGERKTEGN-NGRREMMFAAAAAAICSVAGVA---TAEPKRGSAEAKKAYAPVCVTMPTARICR 104
The following BLAST results are available for this feature:
BLAST of CK937623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PST2_ARATH1.281e-1142.71Photosystem II 5 kDa protein, chloroplastic OS=Ara... [more]
PST2_GOSHI2.184e-1142.00Photosystem II 5 kDa protein, chloroplastic OS=Gos... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004778_C10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937623 ID=CK937623; Name=CK937623; organism=Citrus sinensis; type=EST; length=533bp
GCGGGGAAAATCNNNTGCAACAAAGTCAGCAGCAAACATGGCTTCGATGA
CCATGGCAGCAGCCTCATTACTGCCCACAAGCATGGCCAAAAACCCAGCA
GCAACAAGAGCGAAGAGAGGAGGCCTCATCGTTGTGGCCAAGGCTGCATC
ATCAAAAGCTGAAAATGTGAGCATGGAATTCAAGAACAAGGATGAGAGCA
ACAGCAACGGAAGAAGGGAGCTTGTGTTTGCAGCAGCAGCTGCAGCAGCT
TGCTCCATTGCAAAAGTTGCAATGGCTGAATCTGAGGAGCCCAAACGAGG
GACCCCAGATGCTAAGAAGAAGTATGCTCCTGTTTGTGTCACAATGCCTA
CTGCTAGAATCTGTCGCAAGTGAGAATGTTTTTTAATTTTCATGCTGTTG
ATGTTAATTAGTGTCCAATTAATTGATATGAGATCAATGTTAAAAGCTGT
GAGCATCTGTATCTTGTAATTGGAGAATCCTGTTTATTTTATCTTGTCTT
TGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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