CK937586

Overview
NameCK937586
Unique NameCK937586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1493 contig Csv1_Contig1493:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK937586 vs. ExPASy Swiss-Prot
Match: CI023_MOUSE (Alba-like protein C9orf23 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 40/136 (29.41%), Postives = 64/136 (47.06%), Query Frame = 3 
Query:   69 MDRYQRV-------EKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTW--XXXXXXXXXXXXXXHVSMITITLSKKELNRSSVGYQPP 449
            M++Y+R          P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   GRA  K V+  E++KRR+ GLHQ T +      D+W                HV  + + LS+  L+ S  GYQPP
Sbjct:    1 MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPP 136
The following BLAST results are available for this feature:
BLAST of CK937586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CI023_MOUSE2.879e-1129.41Alba-like protein C9orf23 homolog OS=Mus musculus ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004778_G02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937586 ID=CK937586; Name=CK937586; organism=Citrus sinensis; type=EST; length=698bp
GGGGGGGGGCATAAAAGAAGAAACGTAGCCGNANNAGAGGGCGCTTTATC
TTCAAAGAGTGAAGAAAGATGGATCGGTACCAAAGAGTGGAGAAGCCAAA
AGCAGAGACACCGATTGACGAGAATGAAATTCGGATTACGAGTCAAGGGA
GGATGCGCAGCTACATCACTTATGCTATGACTCTGCTTCAGGAAAGAGGT
TCCAATGAGATTGTATTCAAGGCAATGGGAAGGGCTATCAATAAGACTGT
AACAATAGTGGAGCTAATAAAAAGAAGAATTGTTGGCCTTCATCAAAATA
CAGTTATTGGATCCACGGACATAACTGATACGTGGGAGCCTTTGGAGGAA
GGGCTTCTTCCGTTGGAAACCACAGGGCATGTGTCAATGATTACAATAAC
ACTTTCAAAGAAGGAACTGAATAGGTCTTCTGTTGGGTATCAGCCTCCAC
TGCCTGCTGAACAAGTTAAGCCATTGATAGAATTTGATTATGATGGAGAG
GGCTCACCTAATGGACCCCGTAGGGGTCGGATTGGTAGAGGAAGGTCAAG
AGNNNGAGGTAATGGTTTTGTGTCTGCTGAATATGATGATGGAGGTTGGG
ACCGCAATAATCGGGGCTATTCTAGAGGTAGGGGTCGAGGGAGAGGACGT
AGTTTCCGTGGCCGCGGGAGAGGAGGATATAATGGACCTCATTTTGAT
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