CK937583

Overview
NameCK937583
Unique NameCK937583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937583_ssr94 microsatellite CK937583_ssr94:94..103. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7745 contig Csv1_Contig7745:50..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937583 vs. ExPASy Swiss-Prot
Match: RL373_ARATH (60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.061e-41
Identity = 76/83 (91.57%), Postives = 83/83 (100.00%), Query Frame = 2
Query:   44 MGKGTGSFGKRRNKTHTVCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 292
            MGKGTGSFGKRRNK+HT+CVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+
Sbjct:    1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83          
BLAST of CK937583 vs. ExPASy Swiss-Prot
Match: RL371_ARATH (60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.265e-41
Identity = 76/83 (91.57%), Postives = 82/83 (98.80%), Query Frame = 2
Query:   44 MGKGTGSFGKRRNKTHTVCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 292
            MGKGTGSFGKRRNK+HT+CVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLR+VPRRFK+ FREGTQ
Sbjct:    1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQ 83          
BLAST of CK937583 vs. ExPASy Swiss-Prot
Match: RL372_ARATH (60S ribosomal protein L37-2 OS=Arabidopsis thaliana GN=RPL37B PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 8.981e-41
Identity = 75/83 (90.36%), Postives = 82/83 (98.80%), Query Frame = 2
Query:   44 MGKGTGSFGKRRNKTHTVCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 292
            M KGTGSFGKRRNK+HT+CVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLR+VPRRFK+GFREGT+
Sbjct:    1 MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83          
BLAST of CK937583 vs. ExPASy Swiss-Prot
Match: RL371_DROME (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster GN=RpL37a PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.217e-31
Identity = 61/83 (73.49%), Postives = 71/83 (85.54%), Query Frame = 2
Query:   44 MGKGTGSFGKRRNKTHTVCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQ 292
            M KGT SFGKR NKTHT+C RCGR S+H+QKS CA C YPAA+ R+YNWSVKA RRKTTGTGRM++L+ V RRF++GFREGTQ
Sbjct:    1 MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTGTGRMQHLKVVRRRFRNGFREGTQ 83          
BLAST of CK937583 vs. ExPASy Swiss-Prot
Match: RL37A_YEAST (60S ribosomal protein L37-A OS=Saccharomyces cerevisiae GN=RPL37A PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.940e-31
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 2
Query:   44 MGKGTGSFGKRRNKTHTVCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 289
            MGKGT SFGKR NK+HT+C RCGRRSFH+QK  C++C YPAA+ R+YNW  KA RR TTGTGRMRYL+HV RRFK+GF+ G+
Sbjct:    1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGS 82          
BLAST of CK937583 vs. ExPASy Swiss-Prot
Match: RL37_SPOFR (60S ribosomal protein L37 OS=Spodoptera frugiperda GN=RpL37 PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.100e-30
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 2
Query:   44 MGKGTGSFGKRRNKTHTVCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREG 286
            M KGT SFGKRRNKTHT+C RCGR S+H+QKS+CA C YPAA+ R+Y+WSVKA RRKTTGTGRMR+L+ V RRF++GF+EG
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTGRMRHLKIVRRRFRNGFKEG 81          
BLAST of CK937583 vs. ExPASy Swiss-Prot
Match: RL37B_YEAST (60S ribosomal protein L37-B OS=Saccharomyces cerevisiae GN=RPL37B PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.202e-30
Identity = 56/82 (68.29%), Postives = 70/82 (85.37%), Query Frame = 2
Query:   44 MGKGTGSFGKRRNKTHTVCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 289
            MGKGT SFGKR NK+HT+C RCGRRSFH+QK  C++C YP+A+ R++NW+ KA RR TTGTGRMRYL+HV RRFK+GF+ G+
Sbjct:    1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPSAKTRSHNWAAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGS 82          
BLAST of CK937583 vs. ExPASy Swiss-Prot
Match: RL37_RAT (60S ribosomal protein L37 OS=Rattus norvegicus GN=Rpl37 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 7.133e-30
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 2
Query:   44 MGKGTGSFGKRRNKTHTVCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 289
            M KGT SFGKRRNKTHT+C RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of CK937583 vs. ExPASy Swiss-Prot
Match: RL37_MOUSE (60S ribosomal protein L37 OS=Mus musculus GN=Rpl37 PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 7.133e-30
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 2
Query:   44 MGKGTGSFGKRRNKTHTVCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 289
            M KGT SFGKRRNKTHT+C RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of CK937583 vs. ExPASy Swiss-Prot
Match: RL37_HUMAN (60S ribosomal protein L37 OS=Homo sapiens GN=RPL37 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 7.133e-30
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 2
Query:   44 MGKGTGSFGKRRNKTHTVCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGT 289
            M KGT SFGKRRNKTHT+C RCG +++HLQKS C  C YPA RKR YNWS KA RR TTGTGRMR+L+ V RRF+ GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
The following BLAST results are available for this feature:
BLAST of CK937583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL373_ARATH1.061e-4191.5760S ribosomal protein L37-3 OS=Arabidopsis thalian... [more]
RL371_ARATH5.265e-4191.5760S ribosomal protein L37-1 OS=Arabidopsis thalian... [more]
RL372_ARATH8.981e-4190.3660S ribosomal protein L37-2 OS=Arabidopsis thalian... [more]
RL371_DROME2.217e-3173.49Probable 60S ribosomal protein L37-A OS=Drosophila... [more]
RL37A_YEAST4.940e-3170.7360S ribosomal protein L37-A OS=Saccharomyces cerev... [more]
RL37_SPOFR1.100e-3072.8460S ribosomal protein L37 OS=Spodoptera frugiperda... [more]
RL37B_YEAST3.202e-3068.2960S ribosomal protein L37-B OS=Saccharomyces cerev... [more]
RL37_RAT7.133e-3071.9560S ribosomal protein L37 OS=Rattus norvegicus GN=... [more]
RL37_MOUSE7.133e-3071.9560S ribosomal protein L37 OS=Mus musculus GN=Rpl37... [more]
RL37_HUMAN7.133e-3071.9560S ribosomal protein L37 OS=Homo sapiens GN=RPL37... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_F09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937583 ID=CK937583; Name=CK937583; organism=Citrus sinensis; type=EST; length=576bp
GGGGACTCATCAGAAGGCTTTCCTCTGCTTCGCATACGCTTCGATGGGTA
AGGGAACAGGGAGTTTCGGTAAGAGGAGAAACAAGACACACACTGTGTGT
GTGCGATGTGGCCGTCGCAGCTTCCATCTTCAGAAGAGTCGTTGCGCTGC
TTGTGCTTACCCCGCTGCTCGCAAGAGAACGTATAACTGGAGTGTGAAGG
CAATCCGAAGAAAGACCACTGGAACCGGCAGGATGAGGTATCTGCGCCAT
GTACCTCGCAGGTTCAAGAGCGGCTTCAGAGAAGGTACTCAGGCAGCACC
AAGGAAGAAGGGAGCGGCTGCCTCTGCTTAAGGAGTTGAAGGGTAATTTT
GGGCGTGAATCAGCACCTCATTATAGATTTAGTCTTCTTTAATGTGTGGA
GACAAGATTCATGGGAACATAATTTTGAAAAAGGATGTTATTTGTTTTTG
TGCTTAGTTGTTTTCAATTATGATTACTCTGTAGTCTTTTTCAATTTTGG
ACAAGATGAATGAGTTTATTGTTGTTTGACCTCCTTTNNNTACTTCATGT
TTTGACATCAAAAAAAAAAAAAAAAA
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