CK937578

Overview
NameCK937578
Unique NameCK937578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13367 contig Csv1_Contig13367:302..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937578 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 2
Query:   35 EGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLYHEED 295
            E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F + EP+  C  +L+ Y   D
Sbjct:   51 EATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKECGGILQAYDLRD 138          
BLAST of CK937578 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14
Identity = 37/95 (38.95%), Postives = 60/95 (63.16%), Query Frame = 2
Query:    2 DRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPG---RERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLR 277
            +R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ +R+ LT  NGIS+  R AN +GFMK +P+  CA+ LR
Sbjct:   61 NREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALR 155          
BLAST of CK937578 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.617e-14
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 2
Query:   26 YSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVL 274
            +S EG TD  G YK+ V+ DH++ +C+  +V SP+ DCK    G E++R+  +   GI +  R+AN + FMKAE + GC E L
Sbjct:   69 FSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151          
BLAST of CK937578 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.944e-14
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 2
Query:   35 EGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYHEED 295
            +G TD+TGTY I + + H++ +C  VLV+SP+ DC  V   R+R+ V+LT   GIS   R AN +G+ K  P+  CA +L+    +D
Sbjct:   80 DGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVCAALLKQLDSDD 166          
BLAST of CK937578 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.944e-14
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = 2
Query:   35 EGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLY 283
            E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F + EP+  C  +L+ Y
Sbjct:   51 EATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
BLAST of CK937578 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.436e-12
Identity = 35/87 (40.23%), Postives = 54/87 (62.07%), Query Frame = 2
Query:   26 YSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAP---GRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLR 277
            +  E  TD  G Y I V+ D +D +C+  LV SP ++C  V+     ++ ++V LTS NG +S+ R AN++GFM+ EP+  C EVL+
Sbjct:   72 FKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLK 158          
The following BLAST results are available for this feature:
BLAST of CK937578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PHLB_PHLPR1.175e-1442.05Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
OLEE1_BETVE1.175e-1438.95Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
LAT52_SOLLC2.617e-1442.17Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
PSC13_MAIZE9.944e-1441.38Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
LOLB_LOLPR9.944e-1441.67Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
CHE1_CHEAL1.436e-1240.23Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004778_H06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937578 ID=CK937578; Name=CK937578; organism=Citrus sinensis; type=EST; length=589bp
AGACAGGAAGTCAATGCAAGTAGTATATAGCAGGGAAGGGAAAACAGACT
CAACTGGAACATATAAGATCCTCGTTTCAGAAGACCATCAGGATCAACTT
TGCGATGCTGTCCTCGTTAGCAGCCCCCAGAATGACTGCAAAACAGTTGC
CCCAGGGCGTGAGCGTTCCCGTGTGATCTTGACCAGTTACAACGGCATTT
CTTCTGAAACCCGATATGCCAATTCAATGGGCTTCATGAAGGCAGAGCCC
ATGTCTGGCTGTGCTGAGGTTCTCAGGCTATATCACGAGGAGGATGTGTA
GAGAATGGTGTGGCATGGTTTTTTCTATCGCTTTCCATTTGTTTAAGCTT
TGTGTTGGCCCAGCTATCATACTGTCTCTTCTATTAGTAGTGCCTGGATG
GCTGTGTTGTTTCTATGTTTAGAGAATTCTTAATTTGATGTTAAAGGACG
TGTACTCTATTAATTTATTTATATGCTGGTGCTTCTAGCTTTGAGATGTG
TTGTATCGCTAGTNNNGCCTGATTTATTTTCACAATAAATCTGTTCCAGC
CTTTGAAGCTATGGACTTCAGCTAGTCCGCTACTTTTTC
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