CK937574

Overview
NameCK937574
Unique NameCK937574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937574 vs. ExPASy Swiss-Prot
Match: CSK2E_ARATH (Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.578e-47
Identity = 101/165 (61.21%), Postives = 115/165 (69.70%), Query Frame = 3
Query:  258 MYRDR-------GGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGKSQLDHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFT 731
            MY+DR       GGG+S+SEI+ G +DRKRINDALDKHL+K+SPSTSR  +SKDK+  SVPSTS  KSQL  R     S   ++                        WISWFCNLRGNEFFCEVD++YIQDDFNLCGLS QVPYYDYALDLILDVESS+GDMFT
Sbjct:    1 MYKDRSGGGIMGGGGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRVFTSKDKD--SVPSTSTAKSQLHSRSPDVESDTDSE-----------GSDVSGSEGDDTSWISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNGDMFT 152          
BLAST of CK937574 vs. ExPASy Swiss-Prot
Match: CSK2B_ARATH (Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.868e-40
Identity = 95/165 (57.58%), Postives = 109/165 (66.06%), Query Frame = 3
Query:  258 MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSA---GKSQ---LDHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXXXX-WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFT 731
            MYRDRG   S+ E+V    DRKRINDAL    E+ SPSTSR ++ K K  ++  +T+A   GK Q   ++HRDSRSASL KN                          WISWFCNLRGNEFFCEVDD+YIQDDFNLCGLSS VPYY+YALDLILDVESS G+MFT
Sbjct:    1 MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQVNGKGKGTVTAATTTANLIGKQQSNNINHRDSRSASLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQGEMFT 157          
BLAST of CK937574 vs. ExPASy Swiss-Prot
Match: CSK2D_ARATH (Casein kinase II subunit beta-3 OS=Arabidopsis thaliana GN=CKB3 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.211e-39
Identity = 90/164 (54.88%), Postives = 110/164 (67.07%), Query Frame = 3
Query:  258 MYRDR----GGGASKSEIVAGPLDRKRINDALDKHLEK--TSPSTSRALSSKDKERLSVPSTSAGKSQLDHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFT 731
            MY++R    GGG+S+SEI+ G +DRKRINDAL+K LEK  TS +TSR  SSKDK+  S  ST   K+QL   +S + S   +                         WISWFCNLRGN+FFCEVD++YIQDDFNLCGLS QVPYYDYALDLILDV++S+ +MFT
Sbjct:    1 MYKERSGGGGGGSSRSEILGGAIDRKRINDALNKKLEKSSTSTTTSRVFSSKDKDPFSFTST---KTQLPDVESETDSEGSD---------------VSGSEGDDTSWISWFCNLRGNDFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVDASNSEMFT 146          
BLAST of CK937574 vs. ExPASy Swiss-Prot
Match: CSK2C_ARATH (Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.363e-35
Identity = 86/161 (53.42%), Postives = 96/161 (59.63%), Query Frame = 3
Query:  258 MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGKSQL-DHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXXXX--WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFT 731
            MYR+RG   SKSE+V    DRKRIN+  D       PS S +     K +++  S   GK QL D   SRS S+ K                            WISWFCNLRGNEFFCEVDD+YIQDDFNLCGLS QVPYYDYALDLILDVESSHG+MFT
Sbjct:    1 MYRERGMVGSKSEVV----DRKRINEIHDNR-----PSHSMSQPVNGKGKVTSTSVLMGKQQLHDKESSRSGSISKTNISDAVDISDTDSEESEVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHGEMFT 152          
BLAST of CK937574 vs. ExPASy Swiss-Prot
Match: CSK2B_XENLA (Casein kinase II subunit beta OS=Xenopus laevis GN=csnk2b PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 3
Query:  561 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVE 707
            WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of CK937574 vs. ExPASy Swiss-Prot
Match: CSK2B_RAT (Casein kinase II subunit beta OS=Rattus norvegicus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 3
Query:  561 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVE 707
            WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of CK937574 vs. ExPASy Swiss-Prot
Match: CSK2B_RABIT (Casein kinase II subunit beta OS=Oryctolagus cuniculus GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 3
Query:  561 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVE 707
            WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of CK937574 vs. ExPASy Swiss-Prot
Match: CSK2B_PIG (Casein kinase II subunit beta OS=Sus scrofa GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 3
Query:  561 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVE 707
            WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of CK937574 vs. ExPASy Swiss-Prot
Match: CSK2B_MOUSE (Casein kinase II subunit beta OS=Mus musculus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 3
Query:  561 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVE 707
            WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of CK937574 vs. ExPASy Swiss-Prot
Match: CSK2B_HUMAN (Casein kinase II subunit beta OS=Homo sapiens GN=CSNK2B PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.465e-17
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 3
Query:  561 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVE 707
            WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
The following BLAST results are available for this feature:
BLAST of CK937574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CSK2E_ARATH1.578e-4761.21Putative casein kinase II subunit beta-4 OS=Arabid... [more]
CSK2B_ARATH1.868e-4057.58Casein kinase II subunit beta OS=Arabidopsis thali... [more]
CSK2D_ARATH1.211e-3954.88Casein kinase II subunit beta-3 OS=Arabidopsis tha... [more]
CSK2C_ARATH2.363e-3553.42Casein kinase II subunit beta' OS=Arabidopsis thal... [more]
CSK2B_XENLA6.465e-1775.51Casein kinase II subunit beta OS=Xenopus laevis GN... [more]
CSK2B_RAT6.465e-1775.51Casein kinase II subunit beta OS=Rattus norvegicus... [more]
CSK2B_RABIT6.465e-1775.51Casein kinase II subunit beta OS=Oryctolagus cunic... [more]
CSK2B_PIG6.465e-1775.51Casein kinase II subunit beta OS=Sus scrofa GN=CSN... [more]
CSK2B_MOUSE6.465e-1775.51Casein kinase II subunit beta OS=Mus musculus GN=C... [more]
CSK2B_HUMAN6.465e-1775.51Casein kinase II subunit beta OS=Homo sapiens GN=C... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_G12 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937574 ID=CK937574; Name=CK937574; organism=Citrus sinensis; type=EST; length=732bp
GGGGGAGAGACCTAAGAGGAGCTCGTGTGTGTTTAGTTTTTACCTTGGTT
TTCTCCGTCTCTGAACTCAAATCAAATCTAGGGTTTCCCGTCTCCATCCC
AAAAAAAAGTGTCCTTTAAAGTAAAAAGTCCTTAATTTACGTAATCCATA
TACAGGTTTTTCTATGTGAAGTATCAAAGGTGGAATCTTTGGGAGTTTAG
GGTTCTGAAATTGGAAAAGGAAAAAAGAAAATCAAGTAAAAAAGAATTGG
GGCAGCTATGTATAGAGATCGAGGAGGAGGGGCGTCGAAGTCGGAGATAG
TGGCAGGACCGTTGGATCGAAAGCGCATAAACGATGCGCTGGACAAGCAT
TTAGAGAAGACATCCCCTTCTACTTCGAGGGCCTTGAGTTCTAAAGACAA
GGAGAGGTTGTCCGTACCTTCCACTTCTGCCGGTAAATCGCAGCTCGATC
ACCGCGATTCTCGCTCCGCCTCTCTCCCCAAGAACAAATGCTCTGATGAG
GAATCTGAAACAGACAGTGAAGAATCTGATGTTAGCGGTTCTGATGGAGA
TGACACATCTTGGATCTCATGGTTTTGCAATTTGCGAGGAAATGAATTTT
TCTGTGAAGTTGATGATGAGTACATCCAAGATGATTTTAATCTTTGTGGG
TTGAGCAGTCAAGTTCCATACTATGATTATGCTCTTGATTTGATATTGGA
TGTTGAATCTTCTCATGGTGATATGTTCACTG
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