CX675338

Overview
NameCX675338
Unique NameCX675338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675338_ssr82 microsatellite CX675338_ssr82:82..93. BLAST: Citrus ESTs to Prunus persica proteins V1
CX675338_ssr187 microsatellite CX675338_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX675338 vs. ExPASy Swiss-Prot
Match: OLEO1_SOYBN (P24 oleosin isoform A OS=Glycine max PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  253 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRTRAPGQAKRRVLGTAGGQKVRETAQMTQQKAQGTGTEAKESGK 516
            F++ SPVLVPA +  GLA+AGFLTSGAFG+TALSSFSW+ +++R T    Q     L  A    + E A+   QK +  G + KE G+
Sbjct:   91 FVLFSPVLVPATVAIGLAVAGFLTSGAFGLTALSSFSWILNYIRET----QPASENLAAAAKHHLAEAAEYVGQKTKEVGQKTKEVGQ 174          
BLAST of CX675338 vs. ExPASy Swiss-Prot
Match: OLEO2_SOYBN (P24 oleosin isoform B OS=Glycine max PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.452e-14
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 1
Query:  253 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRTRAPGQAKRRVLGTAGGQKVRETAQMTQQKAQGTGTEAKESGK 516
            FII SPVL+PA +  GLA+AGFLTSG FG+TALSSFSW+ +++R T    Q     L  A    + E A+   QK +  G + KE G+
Sbjct:   90 FIIFSPVLIPATVAIGLAVAGFLTSGVFGLTALSSFSWILNYIRET----QPASENLAAAAKHHLAEAAEYVGQKTKEVGQKTKEVGQ 173          
BLAST of CX675338 vs. ExPASy Swiss-Prot
Match: OLEO2_ARATH (Oleosin 21.2 kDa OS=Arabidopsis thaliana GN=At5g40420 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.226e-14
Identity = 52/132 (39.39%), Postives = 64/132 (48.48%), Query Frame = 1
Query:  109 KGMLPERTPSKSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRTR--APGQ---AKRRVLGTAG--GQKVRETAQMTQQKAQ 483
            K M+PE  PS +Q                                   F++ SPV+VPAAL  GLA+ GFL SG FG+T LSS SW+ ++LR TR   P Q   AKRR+    G  GQK +E  Q  Q KAQ
Sbjct:   41 KSMMPESGPSSTQVLSLLIGVPVVGSLLALAGLLLAGSVIGLMVALPLFLLFSPVIVPAALTIGLAMTGFLASGMFGLTGLSSISWVMNYLRGTRRTVPEQLEYAKRRMADAVGYAGQKGKEMGQHVQNKAQ 172          
BLAST of CX675338 vs. ExPASy Swiss-Prot
Match: OLEO2_ORYSJ (Oleosin 18 kDa OS=Oryza sativa subsp. japonica GN=OLE18 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.578e-13
Identity = 52/145 (35.86%), Postives = 69/145 (47.59%), Query Frame = 1
Query:  100 DAIKGMLPERTPSKSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRT--RAPG---QAKRRVLGTA--GGQKVRETAQMTQQKAQGTGTEAKESG 513
            + +KG+LPE+ PS SQ                                   F+I SPVLVPAAL+ GLA+AGFLTSGA G+  LSS +++A+  R+   R P    QA+RR+   A   G K  +     Q +A   GT A   G
Sbjct:   20 ETVKGILPEKAPSASQALTVATLFPLGGLLLVLSGLALAASVVGLAVATPVFLIFSPVLVPAALLIGLAVAGFLTSGALGLGGLSSLTFLANTARQAFQRTPDYVEQARRRMAEAAAHAGHKTAQAGHAIQGRADQAGTGAGAGG 164          
BLAST of CX675338 vs. ExPASy Swiss-Prot
Match: OLEO2_ORYSI (Oleosin 18 kDa OS=Oryza sativa subsp. indica GN=OLE18 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.578e-13
Identity = 52/145 (35.86%), Postives = 69/145 (47.59%), Query Frame = 1
Query:  100 DAIKGMLPERTPSKSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRT--RAPG---QAKRRVLGTA--GGQKVRETAQMTQQKAQGTGTEAKESG 513
            + +KG+LPE+ PS SQ                                   F+I SPVLVPAAL+ GLA+AGFLTSGA G+  LSS +++A+  R+   R P    QA+RR+   A   G K  +     Q +A   GT A   G
Sbjct:   20 ETVKGILPEKAPSASQALTVATLFPLGGLLLVLSGLALAASVVGLAVATPVFLIFSPVLVPAALLIGLAVAGFLTSGALGLGGLSSLTFLANTARQAFQRTPDYVEQARRRMAEAAAHAGHKTAQAGHAIQGRADQAGTGAGAGG 164          
BLAST of CX675338 vs. ExPASy Swiss-Prot
Match: OLES2_BRANA (Oleosin S2-2 OS=Brassica napus GN=S2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.029e-12
Identity = 46/101 (45.54%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  253 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRT--RAPGQ---AKRRVLGTAG--GQKVRETAQMTQQKAQ-----GTGTEAKESGKT 519
            F++ SPV+VPAA+  GLA+   L SG FG+T LSS SW+ ++LR T    P Q   AKRR+    G  GQK +E  Q  Q KA         TE  E GKT
Sbjct:   84 FLLFSPVIVPAAITIGLAVTAILASGLFGLTGLSSVSWVLNYLRGTSDTVPEQLDYAKRRMADAVGYAGQKGKEMGQYVQDKAHEAHDTSLTTETTEPGKT 184          
BLAST of CX675338 vs. ExPASy Swiss-Prot
Match: OLEO4_ARATH (Oleosin 20.3 kDa OS=Arabidopsis thaliana GN=OL2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.747e-12
Identity = 46/100 (46.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  253 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRT--RAPGQ---AKRRVLGTAG--GQKVRETAQMTQQKAQGTG-----TEAKESGK 516
            F++ SPV+VPAAL  GLA+ G L SG FG+T LSS SW+ ++LR T    P Q   AKRR+    G  G K +E  Q  Q KA         TE  E GK
Sbjct:   87 FLLFSPVIVPAALTIGLAVTGILASGLFGLTGLSSVSWVLNYLRGTSDTVPEQLDYAKRRMADAVGYAGMKGKEMGQYVQDKAHEARETEFMTETHEPGK 186          
BLAST of CX675338 vs. ExPASy Swiss-Prot
Match: OLES1_BRANA (Oleosin S1-2 OS=Brassica napus GN=S1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1
Query:  253 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRTRAP-----GQAKRRVLGTA--GGQKVRETAQMTQQKA 480
            F+I SPV+VPAA V GLA+ GF+ SGA G+T LSS SW+ + +RR R        +AK+R+   A   GQ+ ++  Q  + KA
Sbjct:   72 FLIFSPVIVPAAFVIGLAMTGFMASGAIGLTGLSSMSWVLNHIRRVRERIPDELDEAKQRLADMAEYAGQRTKDAGQTIEDKA 154          
BLAST of CX675338 vs. ExPASy Swiss-Prot
Match: OLEO7_GOSHI (Oleosin 16.4 kDa OS=Gossypium hirsutum GN=MATP7 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  253 FIICSPVLVPAALVTGLAIAGFLTSGAFGITALSSFSWMASFLRRTRAPGQ-----AKRRVLGTAG--GQKVRETAQMTQQKAQGTG 492
            F+I SPVLVPAA+   +A+AGFL+SGAFG+T LSS S++ +  R+     Q     AKR +    G  GQK +ET Q  + KA   G
Sbjct:   66 FVIFSPVLVPAAIAVFMAVAGFLSSGAFGLTGLSSLSYVFNRFRQATGTEQLDADRAKRGMQDMVGYVGQKTKETGQTIENKAHEGG 152          
The following BLAST results are available for this feature:
BLAST of CX675338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
OLEO1_SOYBN8.515e-1547.73P24 oleosin isoform A OS=Glycine max PE=2 SV=2[more]
OLEO2_SOYBN1.452e-1447.73P24 oleosin isoform B OS=Glycine max PE=2 SV=1[more]
OLEO2_ARATH4.226e-1439.39Oleosin 21.2 kDa OS=Arabidopsis thaliana GN=At5g40... [more]
OLEO2_ORYSJ3.578e-1335.86Oleosin 18 kDa OS=Oryza sativa subsp. japonica GN=... [more]
OLEO2_ORYSI3.578e-1335.86Oleosin 18 kDa OS=Oryza sativa subsp. indica GN=OL... [more]
OLES2_BRANA3.029e-1245.54Oleosin S2-2 OS=Brassica napus GN=S2 PE=1 SV=1[more]
OLEO4_ARATH6.747e-1246.00Oleosin 20.3 kDa OS=Arabidopsis thaliana GN=OL2 PE... [more]
OLES1_BRANA4.373e-1144.58Oleosin S1-2 OS=Brassica napus GN=S1 PE=1 SV=1[more]
OLEO7_GOSHI9.743e-1145.98Oleosin 16.4 kDa OS=Gossypium hirsutum GN=MATP7 PE... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_61E09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61E09-J17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675338 ID=CX675338; Name=CX675338; organism=Citrus sinensis; type=EST; length=761bp
CGATAATCAGTACTGCAAAAGCAAAAACACAACAAAATCAGTTCAATGGC
CGAGTCACGCCAGACCCAGCACTACCAGCAACAGCAGCAGCAGCCAAGTG
ATGCCATCAAAGGCATGTTACCCGAAAGGACACCATCTAAATCACAACTT
CTTGCTGTCGTTACCCTTCTGCCTGTTGGTGGCACTCTCCTCCTCCTCTC
TGGTCTCACGTTGGCCGGGACCCTCACTTGCCTCGCTCTCGCCACCCCGC
TTTTTATAATTTGCAGCCCGGTTTTGGTGCCCGCAGCCCTCGTCACTGGC
TTGGCCATCGCCGGTTTCTTGACTTCCGGTGCTTTTGGAATAACTGCGCT
CTCCTCCTTCTCTTGGATGGCCAGTTTTCTAAGGAGAACGCGGGCCCCTG
GACAGGCGAAGCGGCGCGTGCTGGGCACGGCGGGTGGCCAGAAGGTTAGG
GAGACGGCCCAGATGACCCAGCAAAAGGCCCAGGGTACAGGAACGGAAGC
TAAGGAATCAGGAAAGACATAAGTTCTGTCCTTTTTTATGACCCAATGGG
CTTTGCTGTCCTCTGTTTTTTGAATGGTCTTTTCTTAGTGAAGTTGTGGG
GTTGCATGTAATGGAATAATTATGTGAATGGTTTTGATAAGTATGCACCC
TCGTTCTTTTCGTTTCCTCCTTGTGCTGCGGCTCTGTTTGTAAGAATCAC
TACCCCCCCTTTTTTTGGAATAAATTTTTGCAAATCTTGAAGAANAAAAA
AAAAAAAAAAA
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