CK937571

Overview
NameCK937571
Unique NameCK937571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1790 contig Csv1_Contig1790:851..1534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937571 vs. ExPASy Swiss-Prot
Match: SERC2_MOUSE (Serine incorporator 2 OS=Mus musculus GN=Serinc2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 2
Query:  296 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 514
            VTYSY+FFH    LAS++  M LT W  S GE+ K++   W SVWV+I   WA   LY+W+LVAP+L P+R+F
Sbjct:  379 VTYSYSFFHFCLVLASLHVMMTLTNWY-SPGETRKMIST-WTSVWVKICASWAGLFLYLWTLVAPLLLPNRDF 449          
BLAST of CK937571 vs. ExPASy Swiss-Prot
Match: SERC2_BOVIN (Serine incorporator 2 OS=Bos taurus GN=SERINC2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 2
Query:  296 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 514
            VTYSY+FFH+   LAS++  M LT W    GE+ K++   W +VWV+I   W    LY+W+LVAP+L P+R+F
Sbjct:  381 VTYSYSFFHLCLVLASVHIMMTLTNWYRP-GETRKMIST-WTAVWVKICASWTGLLLYLWTLVAPLLLPNRDF 451          
BLAST of CK937571 vs. ExPASy Swiss-Prot
Match: SERIC_NEMVE (Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 2
Query:  296 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 514
            V YSY+F+H +  LAS+Y  M LT W   VG     +     +VWV+I + W    +Y+W+L+AP LFPDR+F
Sbjct:  383 VAYSYSFYHFMLMLASLYIMMTLTNWYKPVGSDFSKLQYSETAVWVKIASSWLCQLIYIWTLLAPALFPDRDF 455          
BLAST of CK937571 vs. ExPASy Swiss-Prot
Match: SERIC_MONBE (Probable serine incorporator OS=Monosiga brevicollis GN=serinc PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 30/73 (41.10%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  296 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 514
            V YS++FFH+ F++A++Y  M+LT W +S  ++   +  GW SVWV++++ W    LY W+++AP+  PDR+F
Sbjct:  412 VRYSWSFFHLTFAVAALYLMMVLTEWDSS--DADVRIGKGWASVWVQVVSSWVIFLLYGWTMMAPVCLPDRDF 482          
BLAST of CK937571 vs. ExPASy Swiss-Prot
Match: YK17_SCHPO (Membrane protein PB1A10.07c OS=Schizosaccharomyces pombe GN=SPAPB1A10.07c PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 54/178 (30.34%), Postives = 78/178 (43.82%), Query Frame = 2
Query:    8 ASVISLYCMYLCYSGLSSEPRDYECNGLHRHSKAXXXXXXXXXXXXXXXXXXYSAVRAGXXXXXXXXXXXXRA-----GGGKPLLPMXXXXXXXXXXXXXPVTYSYAFFHIIFSLASMYSAMLLTGWST-SVGESGK---LVDVG--WPSVWVRILTGWATAALYMWSLVAPILFPDR 508
            +S++  Y  YL  S L++ P + +CN     +                    YSAVRA              A     G   PL                   Y++ +FHI+F LA+ Y+A LLT W+T SV E+ K    V +G  + +VWV+I+T W    LY+WS +AP+ FP R
Sbjct:  267 SSMVMCYTCYLILSALANRPDEGQCNPWGNSASGTREFSKVIGAAFTFFTILYSAVRAASSRESDDSYSYLYADSHDMGVSTPL------EDGSSEEDKHQSDYNFIWFHIVFVLAAFYTASLLTNWNTTSVYENQKNDVFVRIGFSYAAVWVKIITSWVCHGLYVWSCLAPVFFPYR 438          
BLAST of CK937571 vs. ExPASy Swiss-Prot
Match: SERC2_HUMAN (Serine incorporator 2 OS=Homo sapiens GN=SERINC2 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 2
Query:  296 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 514
            VTYSY+FFH    LAS++  M LT W    GE+ K++   W +VWV+I   WA   LY+W+LVAP+L  +R+F
Sbjct:  385 VTYSYSFFHFCLVLASLHVMMTLTNWYKP-GETRKMIST-WTAVWVKICASWAGLLLYLWTLVAPLLLRNRDF 455          
BLAST of CK937571 vs. ExPASy Swiss-Prot
Match: SERIC_DICDI (Probable serine incorporator OS=Dictyostelium discoideum GN=serinc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 49/178 (27.53%), Postives = 72/178 (40.45%), Query Frame = 2
Query:    8 ASVISLYCMYLCYSGLSSEPRDYECNGLHRHSKAXXXXXXXXXXXXXXXXXXYSAVRAGXXXXXXXXXXXXRAGGGKPLLPMXXXXXXXXXXXXXPVTYSYAFFHIIFSLASMYSAMLLTGW-----------STSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDR 508
            + V+ LYC YL YS ++SEP    C+    ++ +                  YSA R+              +    P                    Y+Y+FFH  F+  +MY + LLT W           STS   S   VD G  SVWV++++ W    LY+W+L+ PIL  +R
Sbjct:  244 SGVVMLYCTYLIYSAINSEPPG-TCSS--NNTSSPKESTIIIGAVFTIISVCYSAFRSSDSTELLGNHNHYSSIPTDPNAETTGVADDECEC----TAYNYSFFHFTFACGAMYLSALLTNWATMTSTDITSSSTSSSNSTISVDSGMVSVWVKVVSSWVVVLLYLWTLIGPILLRNR 414          
BLAST of CK937571 vs. ExPASy Swiss-Prot
Match: SERC1_RAT (Serine incorporator 1 OS=Rattus norvegicus GN=Serinc1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  296 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 514
            VTYSY+FFH +  LAS+Y  M LT W     E  + +   W +VWV+I + W    LY+W+LVAP++  +R+F
Sbjct:  382 VTYSYSFFHFMLFLASLYIMMTLTNWYRY--EPSREMKSQWTAVWVKISSSWIGIVLYVWTLVAPLVLTNRDF 452          
BLAST of CK937571 vs. ExPASy Swiss-Prot
Match: SERC1_PONAB (Serine incorporator 1 OS=Pongo abelii GN=SERINC1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  296 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 514
            VTYSY+FFH +  LAS+Y  M LT W     E  + +   W +VWV+I + W    LY+W+LVAP++  +R+F
Sbjct:  382 VTYSYSFFHFMLFLASLYIMMTLTNWYRY--EPSREMKSQWTAVWVKISSSWIGIVLYVWTLVAPLVLTNRDF 452          
BLAST of CK937571 vs. ExPASy Swiss-Prot
Match: SERC1_MOUSE (Serine incorporator 1 OS=Mus musculus GN=Serinc1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  296 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 514
            VTYSY+FFH +  LAS+Y  M LT W     E  + +   W +VWV+I + W    LY+W+LVAP++  +R+F
Sbjct:  382 VTYSYSFFHFMLFLASLYIMMTLTNWYRY--EPSREMKSQWTAVWVKISSSWIGLVLYVWTLVAPLVLTNRDF 452          
The following BLAST results are available for this feature:
BLAST of CK937571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SERC2_MOUSE9.159e-1552.05Serine incorporator 2 OS=Mus musculus GN=Serinc2 P... [more]
SERC2_BOVIN1.013e-1347.95Serine incorporator 2 OS=Bos taurus GN=SERINC2 PE=... [more]
SERIC_NEMVE2.256e-1343.84Probable serine incorporator OS=Nematostella vecte... [more]
SERIC_MONBE2.256e-1341.10Probable serine incorporator OS=Monosiga brevicoll... [more]
YK17_SCHPO5.026e-1330.34Membrane protein PB1A10.07c OS=Schizosaccharomyces... [more]
SERC2_HUMAN5.026e-1347.95Serine incorporator 2 OS=Homo sapiens GN=SERINC2 P... [more]
SERIC_DICDI9.479e-1227.53Probable serine incorporator OS=Dictyostelium disc... [more]
SERC1_RAT9.479e-1243.84Serine incorporator 1 OS=Rattus norvegicus GN=Seri... [more]
SERC1_PONAB9.479e-1243.84Serine incorporator 1 OS=Pongo abelii GN=SERINC1 P... [more]
SERC1_MOUSE9.479e-1243.84Serine incorporator 1 OS=Mus musculus GN=Serinc1 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004778_G09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937571 ID=CK937571; Name=CK937571; organism=Citrus sinensis; type=EST; length=684bp
GGGGCCTGCTTCAGTAATATCTCTTTACTGCATGTACCTCTGTTACAGTG
GACTTTCAAGTGAACCAAGAGATTATGAATGCAATGGTCTCCACAGGCAT
TCTAAAGCTGTCTCTACTGGCAGCCTTACCTTGGGCCTGATTACCACTGT
CCTATCAGTAGTATATTCTGCAGTGCGTGCTGGATCTTCTACAACTCTGC
TTTCACCACCAAGTTCACCTCGTGCAGGTGGCGGGAAGCCTCTGCTTCCA
ATGGACAAGGCCGATGAGGTAGAAGAAAAGGAAAAGGCCAAGCCAGTCAC
ATATTCATATGCTTTCTTCCACATTATTTTCTCTCTGGCCAGCATGTATT
CTGCAATGCTTCTAACTGGGTGGTCAACCTCTGTCGGGGAGAGTGGGAAG
CTAGTTGACGTGGGTTGGCCATCTGTCTGGGTTAGGATTCTGACCGGGTG
GGCAACTGCAGCTCTCTATATGTGGTCACTGGTTGCTCCAATTCTGTTCC
CGGACAGGGAGTTCTGAATTCCAAAAATGTTTTAAATACCCCTATATATA
TTGTGCATGTGTGATGCAGCTCCCTAACGGTTAAGCGTATACTGTTTGGA
ATGCTTGCTTATCATAAAATTGTAAAAATGTTGTCTATCCTAAGTTGTAT
GAATTGAATTGCTTTCAAAAAAAAAAAAAAAAAA
back to top