EL492654

Overview
NameEL492654
Unique NameEL492654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length176
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:436..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492654 vs. ExPASy Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.917e-21
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -2
Query:   29 QIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGV 175
            QIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGV
Sbjct:  119 QIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGV 167          
BLAST of EL492654 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.917e-21
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -2
Query:   29 QIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGV 175
            QIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGV
Sbjct:  118 QIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGV 166          
BLAST of EL492654 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.764e-20
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = -2
Query:   29 QIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGV 175
            QIPRLLGPGLNKAGKFPTLV+HQESLE+KVNETKATVKFQLKKVLCMGV
Sbjct:  118 QIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGV 166          
BLAST of EL492654 vs. ExPASy Swiss-Prot
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.308e-15
Identity = 36/49 (73.47%), Postives = 44/49 (89.80%), Query Frame = -2
Query:   29 QIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGV 175
            QIPRLLGPGLNKAGKFP L++HQES+  K++E KAT+KFQ+KKVLC+ V
Sbjct:  119 QIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKATIKFQMKKVLCLSV 167          
BLAST of EL492654 vs. ExPASy Swiss-Prot
Match: RL10A_DICDI (60S ribosomal protein L10a OS=Dictyostelium discoideum GN=rpl10a PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.308e-15
Identity = 35/49 (71.43%), Postives = 43/49 (87.76%), Query Frame = -2
Query:   29 QIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGV 175
            Q+P+LLGPGLNK GKFPTL+TH E + SK+N+ K+TVKFQLKKVLC+ V
Sbjct:  119 QVPKLLGPGLNKVGKFPTLLTHSEDMASKINDVKSTVKFQLKKVLCLAV 167          
BLAST of EL492654 vs. ExPASy Swiss-Prot
Match: RL10A_NEUCR (60S ribosomal protein L10a OS=Neurospora crassa GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.708e-15
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = -2
Query:   29 QIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGV 175
            QIPRLLGPGL+KAGKFPT V+H + L  K+NE K+T+KFQLKKVLCMGV
Sbjct:  119 QIPRLLGPGLSKAGKFPTPVSHSDDLTGKLNEVKSTIKFQLKKVLCMGV 167          
BLAST of EL492654 vs. ExPASy Swiss-Prot
Match: RL10A_ICTPU (60S ribosomal protein L10a OS=Ictalurus punctatus GN=rpl10a PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.708e-15
Identity = 35/49 (71.43%), Postives = 45/49 (91.84%), Query Frame = -2
Query:   29 QIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGV 175
            QIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ V
Sbjct:  118 QIPRILGPGLNKAGKFPSLLTHNENLNTKVDEVKSTIKFQMKKVLCLAV 166          
BLAST of EL492654 vs. ExPASy Swiss-Prot
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.708e-15
Identity = 37/49 (75.51%), Postives = 45/49 (91.84%), Query Frame = -2
Query:   29 QIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGV 175
            QIPR+LGPGLNKAGKFP++VTH ESL+SK +E +ATVKFQ+KKVLC+ V
Sbjct:  118 QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSV 166          
BLAST of EL492654 vs. ExPASy Swiss-Prot
Match: RL10A_XENLA (60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.914e-15
Identity = 35/49 (71.43%), Postives = 45/49 (91.84%), Query Frame = -2
Query:   29 QIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGV 175
            QIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ V
Sbjct:  119 QIPRILGPGLNKAGKFPSLLTHNENLVAKVDEVKSTIKFQMKKVLCLAV 167          
BLAST of EL492654 vs. ExPASy Swiss-Prot
Match: RL10A_DANRE (60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.914e-15
Identity = 35/49 (71.43%), Postives = 45/49 (91.84%), Query Frame = -2
Query:   29 QIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGV 175
            QIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ V
Sbjct:  118 QIPRILGPGLNKAGKFPSLLTHNENLGTKVDEVKSTIKFQMKKVLCLAV 166          
The following BLAST results are available for this feature:
BLAST of EL492654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
R10A3_ARATH7.917e-2197.9660S ribosomal protein L10a-3 OS=Arabidopsis thalia... [more]
R10A1_ARATH7.917e-2197.9660S ribosomal protein L10a-1 OS=Arabidopsis thalia... [more]
R10A2_ARATH1.764e-2095.9260S ribosomal protein L10a-2 OS=Arabidopsis thalia... [more]
RL10A_SPOFR1.308e-1573.4760S ribosomal protein L10a OS=Spodoptera frugiperd... [more]
RL10A_DICDI1.308e-1571.4360S ribosomal protein L10a OS=Dictyostelium discoi... [more]
RL10A_NEUCR1.708e-1575.5160S ribosomal protein L10a OS=Neurospora crassa GN... [more]
RL10A_ICTPU1.708e-1571.4360S ribosomal protein L10a OS=Ictalurus punctatus ... [more]
RL10A_CAEEL1.708e-1575.5160S ribosomal protein L10a OS=Caenorhabditis elega... [more]
RL10A_XENLA2.914e-1571.4360S ribosomal protein L10a OS=Xenopus laevis GN=rp... [more]
RL10A_DANRE2.914e-1571.4360S ribosomal protein L10a OS=Danio rerio GN=rpl10... [more]

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Properties
Property NameValue
Genbank descriptionC5010 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC5010, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492654 ID=EL492654; Name=EL492654; organism=Citrus sinensis; type=EST; length=176bp
CTTTTTGGTTGACAGGTTTCCGACAGTNAACTCCCATGCAAAGCACCTTC
TTCAATTGGAACTTCACTGTTGCCTTAGTCTCGTTGACTTTGGACTCCAG
GGATTCTTGGTGAGTAACAAGGGTAGGGAACTTTCCTGCCTTGTTGAGAC
CAGGACCCAACAAACGAGGAATCTGC
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