CK937557

Overview
NameCK937557
Unique NameCK937557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length285
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2138 contig Csv1_Contig2138:13..297. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937557 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.167e-18
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 3
Query:  144 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRNYLFGRID 284
            FYQDFDLTWG  RAKIFNGGQLLSLSLD+VSGSGF+SK+ YLFGRID
Sbjct:   32 FYQDFDLTWGGDRAKIFNGGQLLSLSLDKVSGSGFKSKKEYLFGRID 78          
BLAST of CK937557 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.983e-16
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 3
Query:  144 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRNYLFGRID 284
            F+ +FDLTWGD R KIFNGG +LSLSLD+VSGSGF+SK+ YLFGRID
Sbjct:   28 FFDEFDLTWGDHRGKIFNGGNMLSLSLDQVSGSGFKSKKEYLFGRID 74          
BLAST of CK937557 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 35/47 (74.47%), Postives = 43/47 (91.49%), Query Frame = 3
Query:  144 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRNYLFGRID 284
            F ++FDLTWG+ R KIF+GG++LSLSLDRVSGSGF+SK+ YLFGRID
Sbjct:   27 FNEEFDLTWGEHRGKIFSGGKMLSLSLDRVSGSGFKSKKEYLFGRID 73          
BLAST of CK937557 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.594e-13
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 3
Query:  144 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRNYLFGRID 284
            FY+ FD+TWG+ RA IF  GQLL+ +LD+VSGSGFQSK+ YLFG+ID
Sbjct:   30 FYESFDITWGNGRANIFENGQLLTCTLDKVSGSGFQSKKEYLFGKID 76          
BLAST of CK937557 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 3
Query:  144 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRNYLFGRID 284
            F  +FD+TWGD R K+ N G+LL+LSLDR SGSGFQ+K+ YLFG+ID
Sbjct:   30 FDTEFDITWGDGRGKVLNNGELLTLSLDRASGSGFQTKKEYLFGKID 76          
BLAST of CK937557 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.762e-12
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 3
Query:  144 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRNYLFGRID 284
            FY +FD+TWG+ RA I   GQLL+ +LD++SGSGFQSK+ YLFG+ID
Sbjct:   26 FYDNFDITWGNGRANIVESGQLLTCTLDKISGSGFQSKKEYLFGKID 72          
BLAST of CK937557 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.762e-12
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 3
Query:  144 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRNYLFGRID 284
            FY  FD+TWG  RA IF  GQLL+ +LD+ SGSGFQSK+ YLFG+ID
Sbjct:   27 FYDSFDITWGAGRANIFESGQLLTCTLDKTSGSGFQSKKEYLFGKID 73          
BLAST of CK937557 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 3
Query:  144 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRNYLFGRID 284
            F +D ++TWGD R +I N G LL+LSLD+ SGSGFQSK  YLFG+ID
Sbjct:   26 FQRDVEITWGDGRGQITNNGDLLTLSLDKASGSGFQSKNEYLFGKID 72          
BLAST of CK937557 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.341e-11
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 3
Query:  144 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRNYLFGRID 284
            F QD D+TWGD R  I N G LL+L LD+ SGSGFQSK  YL+G++D
Sbjct:   28 FNQDIDITWGDGRGNILNNGTLLNLGLDQSSGSGFQSKAEYLYGKVD 74          
BLAST of CK937557 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 3
Query:  144 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRNYLFGRID 284
            F  D ++ WG+ R KI N GQLL+LSLD+ SGSGFQSK  YLFG+ID
Sbjct:   24 FNTDVNVAWGNGRGKILNNGQLLTLSLDKSSGSGFQSKTEYLFGKID 70          
The following BLAST results are available for this feature:
BLAST of CK937557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
BRU1_SOYBN8.167e-1887.23Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH15_ARATH9.983e-1676.60Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH16_ARATH6.471e-1574.47Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH14_ARATH1.594e-1368.09Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH25_ARATH6.057e-1365.96Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH13_ARATH1.762e-1263.83Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH12_ARATH1.762e-1265.96Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH23_ARATH1.492e-1163.83Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH21_ARATH4.341e-1161.70Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH24_ARATH9.670e-1163.83Xyloglucan endotransglucosylase/hydrolase protein ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004779_B08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937557 ID=CK937557; Name=CK937557; organism=Citrus sinensis; type=EST; length=285bp
GTTTTCAAACAAACAGCTTCTCTCTCTTGTTGTGTTATAACTCATACAGC
AAATTAAGAACTATGGGTTATCATTATTCTTGTAATGGGTTGTTGTTATT
GGTGAGTGTTTTGATGGTTGTTGCCTCATCAGCTGTGGGTAGCTTCTATC
AAGACTTTGATTTAACATGGGGTGATAAGAGAGCAAAGATTTTCAATGGC
GGACAACTTCTTTCTCTGTCTCTAGACAGAGTTTCTGGCTCTGGTTTTCA
GTCAAAAAGAAACTACTTATTTGGCAGAATTGATA
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