CK937555

Overview
NameCK937555
Unique NameCK937555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:239..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK937555 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.697e-30
Identity = 67/121 (55.37%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:   43 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXLSARKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 405
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                 +SARKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CK937555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN2.697e-3055.37Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004779_B05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937555 ID=CK937555; Name=CK937555; organism=Citrus sinensis; type=EST; length=597bp
GTTAAAGATTTAGAAACTAGCAGCTAAATTGTAAATTTAAAGATGCTAGA
GAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTG
GCAGGCTGAGGAAAATCACCACAACACCCTTAGCAGTCAAAGAGGGTGGT
GAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGC
GGGTCCAGGGGCACCGTCGACGCCTGTGACGCCGACGACGCCGCTGTCGG
CGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTT
GCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAA
CTCTCCCACTGTTTATGACTGGCTTTACAGTGGGGAGACTAGGAGCAAGC
ATCATCACTGAGTGGATGATACGCTCCAGCGATGTAAATGAATGTGATGG
GTCACCAACTCACCGGATGAGTTGCCTGTAGTCTGTAGATAGTGTCGTTT
CGTTTTGGATTTCGCAACGTGTCCTTGTCGTTTTGTTAATGCTATTTGTA
TTACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAAATGCTGCTGACT
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