EL492653

Overview
NameEL492653
Unique NameEL492653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7505 contig Csv1_Contig7505:466..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 5.148e-36
Identity = 71/74 (95.95%), Postives = 74/74 (100.00%), Query Frame = -2 
Query:   98 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 319
            KCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQ
Sbjct:  136 KCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQ 209
[Close]
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.148e-36
Identity = 71/74 (95.95%), Postives = 74/74 (100.00%), Query Frame = -2 
Query:   98 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 319
            KCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQ
Sbjct:  135 KCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQ 208
[Close]
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 5.148e-36
Identity = 71/74 (95.95%), Postives = 74/74 (100.00%), Query Frame = -2 
Query:   98 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 319
            KCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQ
Sbjct:  135 KCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQ 208
[Close]
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.724e-36
Identity = 70/74 (94.59%), Postives = 74/74 (100.00%), Query Frame = -2 
Query:   98 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 319
            KCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG+PHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQ
Sbjct:  127 KCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQ 200
[Close]
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS2_DROME (40S ribosomal protein S2 OS=Drosophila melanogaster GN=sop PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 5.328e-33
Identity = 68/91 (74.73%), Postives = 79/91 (86.81%), Query Frame = -2 
Query:   47 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQS*LSIVRCFHILLRGST 319
            KCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSV+VR++PAPRG GIV+A VPKK+L   ++ +   +   RGST
Sbjct:  125 KCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLT--MAGIEDCYTSARGST 213
[Close]
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS2_URECA (40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.187e-32
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = -2 
Query:  101 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 319
            KCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSV VR++PAPRG GIV+A VPKK+L
Sbjct:  128 KCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLL 200
[Close]
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.644e-32
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = -2 
Query:  101 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 319
            KCSKEVATAIRGAIILAKLS+IPVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L
Sbjct:  127 KCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLL 199
[Close]
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS2_RAT (40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.453e-32
Identity = 62/73 (84.93%), Postives = 70/73 (95.89%), Query Frame = -2 
Query:  101 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 319
            KCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L
Sbjct:  142 KCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLL 214
[Close]
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 3.453e-32
Identity = 62/73 (84.93%), Postives = 70/73 (95.89%), Query Frame = -2 
Query:  101 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 319
            KCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L
Sbjct:  142 KCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLL 214
[Close]
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS2_HUMAN (40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.453e-32
Identity = 62/73 (84.93%), Postives = 70/73 (95.89%), Query Frame = -2 
Query:  101 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 319
            KCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L
Sbjct:  142 KCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLL 214
The following BLAST results are available for this feature:
BLAST of EL492653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RS23_ARATH5.148e-3695.9540S ribosomal protein S2-3 OS=Arabidopsis thaliana... [more]
RS22_ARATH5.148e-3695.9540S ribosomal protein S2-2 OS=Arabidopsis thaliana... [more]
RS21_ARATH5.148e-3695.9540S ribosomal protein S2-1 OS=Arabidopsis thaliana... [more]
RS24_ARATH6.724e-3694.5940S ribosomal protein S2-4 OS=Arabidopsis thaliana... [more]
RS2_DROME5.328e-3374.7340S ribosomal protein S2 OS=Drosophila melanogaste... [more]
RS2_URECA1.187e-3287.6740S ribosomal protein S2 OS=Urechis caupo GN=RPS2 ... [more]
RS2_ICTPU2.644e-3286.3040S ribosomal protein S2 OS=Ictalurus punctatus GN... [more]
RS2_RAT3.453e-3284.9340S ribosomal protein S2 OS=Rattus norvegicus GN=R... [more]
RS2_MOUSE3.453e-3284.9340S ribosomal protein S2 OS=Mus musculus GN=Rps2 P... [more]
RS2_HUMAN3.453e-3284.9340S ribosomal protein S2 OS=Homo sapiens GN=RPS2 P... [more]

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Properties
Property NameValue
Genbank descriptionC5000 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC5000, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492653 ID=EL492653; Name=EL492653; organism=Citrus sinensis; type=EST; length=335bp
AGACACTCAAAGGTTGTCCTTGACAAAGTTTACTCAAGTAGATCTTGGTC
GACCCACGCAGTAAGATGTGAAAACATCGTACAATACTCAGTCAAGACTG
CAGCACCTTCTTTGGAACCCTAGCCGCCACAATTCCGGCACCACGTGGGG
CCGGAACCATCCTCACGGTGACACTGCCACACTTACCGGTCACCTTACAC
GGCACGGTGTGTGGCCTCCCGATCTTGTTACCCCAGTAACCCCTTCTCAC
CGGAATCACCGACAGCTTCGCCAATATGATAGCGCCACGGATGGCAGTGG
CAACCTCTTTGGAGCACTTACTCAGGACTCATCAC
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