CK937544

Overview
NameCK937544
Unique NameCK937544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.257e-15
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPS 447
            KLFV G++F TTEE L   FS++GQV E  ++ D+   RS+G+G+VTF   E+A++A+  MNGK +DGR + VD    S
Sbjct:    7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQAGKS 85          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.064e-14
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPSRR 453
            KLFV G++F+T E+ L D FS FG ++E  ++ D+   RS+G+G++TF+  E A +A+  MNG+ LDGR + VD+   S R
Sbjct:    7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSAR 87          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.390e-14
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPS 447
            KLF+ G++F T EE L   FS++GQ++E  ++ D+   RS+G+G+VTF   ++A++A+  MNGK +DGR + VD    S
Sbjct:    6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQAGKS 84          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPS 447
            KLFV G+SF T E+ L   FS++GQ++E  ++ D+   RS+G+G+VTF   ++A++A+  MNGK +DGR + VD    S
Sbjct:    7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPS 447
            KLFV G+SF T E+ L   FS++GQ++E  ++ D+   RS+G+G+VTF   ++A++A+  MNGK +DGR + VD    S
Sbjct:    7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPS 447
            KLFV G+SF T E+ L   FS++GQ++E  ++ D+   RS+G+G+VTF   ++A++A+  MNGK +DGR + VD    S
Sbjct:    7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPS 447
            KLFV G+SF T E+ L   FS++GQ++E  ++ D+   RS+G+G+VTF   ++A++A+  MNGK +DGR + VD    S
Sbjct:    7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPS 447
            KLFV G+SF T E+ L   FS++GQ++E  ++ D+   RS+G+G+VTF   ++A++A+  MNGK +DGR + VD    S
Sbjct:    7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.097e-14
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPSRR 453
            KLFV G++F+T E+ L D FS FG ++E  ++ D+   RS+G+G++TF+  E A + +  MNG+ LDGR + VD+   S R
Sbjct:    7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHAGKSAR 87          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.097e-14
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPSRR 453
            KLFV G++F+T E+ L D FS FG ++E  ++ D+   RS+G+G++TF+  E A  A+  MNG+ LDGR + VD+   S R
Sbjct:    7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSAR 87          
The following BLAST results are available for this feature:
BLAST of CK937544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
CIRBP_XENTR1.257e-1548.10Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
RBM3_MOUSE1.064e-1444.44Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
CIRBB_XENLA1.390e-1443.04Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
CIRBP_RAT2.371e-1444.30Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_PONAB2.371e-1444.30Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_MOUSE2.371e-1444.30Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_HUMAN2.371e-1444.30Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
CIRBP_CRIGR2.371e-1444.30Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
RBM3_RAT3.097e-1443.21Putative RNA-binding protein 3 OS=Rattus norvegicu... [more]
RBM3_HUMAN3.097e-1444.44Putative RNA-binding protein 3 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937544 ID=CK937544; Name=CK937544; organism=Citrus sinensis; type=EST; length=639bp
GGGGATTCAATTTTGATCACAAACATGGCATATAACTGAAGTACTAAATT
GGGCTTCTTCTGCTCACCTGTTGCGTTGTTATTTATTTACTCTCCCTTGC
AAAAATGGCGGCGCTAATACGAAAAAAACATTTTCAGAAATGGCGCAGTC
TCTCATTCAAACTTGAAAATTTCAGCAGCCCAACTCGTATCTTACAGAGG
ATTCACTTCTAAGCTTTTCGTCAAAGGCGTATCTTTCTCAACCACTGAAG
AGATGTTAGCTGATGCTTTTTCACAATTTGGCCAAGTCACTGAGGCAACA
ATAATAACAGATAAAGGTAAGAACAGATCAAAAGGTTATGGGTACGTGAC
TTTCAGCACAGAAGAGGAAGCCCAAAATGCCTTGACAGAGATGAATGGGA
AGTTACTAGATGGACGAGTCCTTTTTGTGGACAATGTAAGACCCAGCAGA
CGTTACAATACTGATGTGCCACTTGCGAGACAACCTCCCCAGTCAGCTGA
AGATAGCCGACATTAAATTGTTTTACATTTCATATGAATATATTGCGGTG
TCCTTAATGCTGGATACATGGGTGCTCAAATCATTTCATCTATAACAAAA
TATATTTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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