CK937539

Overview
NameCK937539
Unique NameCK937539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1389 contig Csv1_Contig1389:236..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK937539 vs. ExPASy Swiss-Prot
Match: PST2_ARATH (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.871e-11
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 3 
Query:   63 SMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRRELVFXXXXXXXXXXXXXXXXESEEPKRGTPDAKKKYAPVCVAMPTARICR 350
            ++AK P+AT  +R  L VV  + S    ++ +    K++SS+  RR+L+F                E EEPKRGT  AKKKYA VCV MPTA+ICR
Sbjct:   13 AVAKVPSATGGRR--LSVVRASTSDNTPSLEV----KEQSSTTMRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102
The following BLAST results are available for this feature:
BLAST of CK937539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PST2_ARATH1.871e-1142.71Photosystem II 5 kDa protein, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004779_C05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937539 ID=CK937539; Name=CK937539; organism=Citrus sinensis; type=EST; length=501bp
GGGGAAAGTCAGCAGCAAACATGGCTTCGATGACCATGGCAGCAGCCTCA
TTACTGCCCACAAGCATGGCCAAAAACCCAGCAGCAACAAGAGCGAAGAG
AGGAGGCCTCATCGTTGTGGCCAAGGCTGCATCATCAAAAGCTGAAAATG
TGAGCATGGAATTCAAGAACAAGGATGAGAGCAGCAGCAACGGAAGAAGG
GAGCTTGTGTTTGCAGCAGCAGCTGCAGCAGCTTGCTCCATTGCAAAAGT
TGCAATGGCTGAATCTGAGGAGCCCAAACGAGGGACCCCAGATGCTAAGA
AGAAGTATGCTCCTGTTTGTGTCGCAATGCCTACTGCTAGAATCTGTCGC
AAGTGAGAATGTTTTTTAATTTTCATGCTGTTGATGTTAATTAGTGTCCA
ATTAATTGATATGAGATCAATGTTAAAAGCTGTGAGCATCTGTATCTTGT
AATTGGAGAATCCTGTTTATTTGAAAAAAAACAAAAAAAATAAAAAAAAA
A
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