CK937538

Overview
NameCK937538
Unique NameCK937538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937538_ssr505 microsatellite CK937538_ssr505:505..516. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2138 contig Csv1_Contig2138:511..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.108e-56
Identity = 103/141 (73.05%), Postives = 118/141 (83.69%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSECRQ 425
            YS+IWKPQH+IFLVDN PIRVFKNAE LGVPFP+NQPM+IYSSLWNADDWATRGGLVKTDW+KAPFTAYYRNF+AI  ++  S          A+ +    +ELDA SRRRLRWVQKYFMIYNYC+DLKRFPQG P+EC++
Sbjct:  151 YSIIWKPQHIIFLVDNTPIRVFKNAEPLGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKAIEFSSKSS-----ISNSGAEYE---ANELDAYSRRRLRWVQKYFMIYNYCSDLKRFPQGLPAECKR 283          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 7.656e-55
Identity = 98/143 (68.53%), Postives = 114/143 (79.72%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC--NNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSECRQ 425
            YS++W+PQH+IF+VDN+PIRVF NAE LGVPFP+NQPMKIYSSLWNADDWATRGGLVKTDW+KAPFTAYYR F A  C  ++  S             + Q  +EL+A  RRRLRWVQKYFMIY+YC+DLKRFPQGFP ECR+
Sbjct:  146 YSLVWRPQHIIFMVDNVPIRVFNNAEQLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAACTVSSGSSFCDPKFKSSFTNGESQVANELNAYGRRRLRWVQKYFMIYDYCSDLKRFPQGFPPECRK 288          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.800e-54
Identity = 96/141 (68.09%), Postives = 111/141 (78.72%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSECRQ 425
            YS++W+PQH+IFLVDN+PIRVF NAE LGVPFP++QPM+IYSSLWNADDWATRGGLVKTDW+KAPFTAYYR F A  C    S             + Q   EL+A  RRRLRWVQKYFMIYNYC+DLKRFP+GFP EC++
Sbjct:  147 YSIVWRPQHIIFLVDNLPIRVFNNAEKLGVPFPKSQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAAC-TASSGCDPKFKSSFGDGKLQVATELNAYGRRRLRWVQKYFMIYNYCSDLKRFPRGFPPECKK 286          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.225e-44
Identity = 83/141 (58.87%), Postives = 102/141 (72.34%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC--NNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            Y+++W PQ +IF VD  PIR FKN ESLG  FP+N+PM++YSSLWNADDWATRGGLVKTDW+KAPFTA YR F+   C  +N  S              W  + ELD+T+++R+RWVQ+ +MIYNYCTD KRFPQG P EC
Sbjct:  142 YTILWNPQRIIFTVDGTPIREFKNMESLGTLFPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACVWSNGKSSCPNASKQGTTTGSWLSQ-ELDSTAQQRMRWVQRNYMIYNYCTDAKRFPQGLPKEC 281          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.090e-44
Identity = 80/140 (57.14%), Postives = 103/140 (73.57%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSECR 422
            YSV+W P H++F+VD+IP+R FKN + +G+ +P+ QPM++YSSLWNAD WATRGGLVKTDW+KAPFTA YRNFRA  C + G +            +W  +  LD T+  ++R VQ+ +MIYNYCTD KRFPQGFP ECR
Sbjct:  149 YSVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADACVSSGGR----SSCPAGSPRWFSQ-RLDLTAEDKMRVVQRKYMIYNYCTDTKRFPQGFPKECR 283          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.336e-42
Identity = 78/139 (56.12%), Postives = 93/139 (66.91%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            YS++W PQ +IF VD  PIR FKN ES G  FP+NQPM++YSSLWNA++WATRGGLVKTDW+KAPFTA YR F    C     +                  ELD+T + ++RWVQ  +MIYNYCTD KRFPQG P EC
Sbjct:  145 YSILWNPQRIIFSVDGTPIREFKNMESQGTLFPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACVVINGQSSCPNVSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPREC 283          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.268e-41
Identity = 80/139 (57.55%), Postives = 98/139 (70.50%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            YS++W PQ +I  VD+ PIR FKN ESLGV FP+N+PM++Y+SLWNADDWATRGGLVKTDW+KAPF A YRN +     N                 W  + E+D+TS+ RL+WVQK +MIYNYCTD +RFPQG P EC
Sbjct:  143 YSILWNPQRIILTVDDTPIREFKNYESLGVLFPKNKPMRMYASLWNADDWATRGGLVKTDWSKAPFMASYRNIKIDSKPN---------------SNWYTQ-EMDSTSQARLKWVQKNYMIYNYCTDHRRFPQGAPKEC 265          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.689e-41
Identity = 76/139 (54.68%), Postives = 96/139 (69.06%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            Y +IW PQ VIF +D IPIR FKN+E+LGVPFP++QPM++Y+SLW A+ WATRGGL KTDW+KAPFTA+YRN+    C     K         A   W  +  LD   + R++W Q+ +M+YNYCTD KRFPQG P EC
Sbjct:  149 YCIIWNPQRVIFTIDGIPIREFKNSEALGVPFPKHQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVDACVWSNGK-----SSCSANSSWFTQ-VLDFKGKNRVKWAQRKYMVYNYCTDKKRFPQGAPPEC 281          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.818e-41
Identity = 78/139 (56.12%), Postives = 96/139 (69.06%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            Y+V+W P ++IFLVD IPIRVFKN E+ GV +P++QPMKIYSSLW ADDWAT+GG VKTDWT APF+A YR+F  + C  C            A         L++    +L+WVQK +MIYNYCTD KRFPQG P+EC
Sbjct:  146 YTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYRSFNDVDC--CSRTSIWNWVTCNANSNSWMWTTLNSNQLGQLKWVQKDYMIYNYCTDFKRFPQGLPTEC 282          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.327e-40
Identity = 79/144 (54.86%), Postives = 98/144 (68.06%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRD--ELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSECRQH 428
            YSV+W    ++FLVDNIPIRVFKN + LGV FP NQPMK+Y+SLWNADDWATRGGL KTDW+KAPF A Y+ F    C    + R         +R W   +  +LD+   RRL+WV++ F IYNYCTD  R+PQ  P ECR++
Sbjct:  151 YSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDWSKAPFVAEYKGFHVDGCEASVNSR---FCATQGKRWWDQTEFRDLDSFQWRRLKWVRQKFTIYNYCTDRTRYPQ-LPPECRRN 290          
The following BLAST results are available for this feature:
BLAST of CK937538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
BRU1_SOYBN3.108e-5673.05Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH16_ARATH7.656e-5568.53Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH15_ARATH3.800e-5468.09Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH22_ARATH1.225e-4458.87Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH25_ARATH2.090e-4457.14Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH23_ARATH3.336e-4256.12Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH24_ARATH1.268e-4157.55Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH20_ARATH3.689e-4154.68Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH12_ARATH4.818e-4156.12Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHB_PHAAN5.327e-4054.86Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_E04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937538 ID=CK937538; Name=CK937538; organism=Citrus sinensis; type=EST; length=627bp
CTTACTCCGTCATCTGGAAGCCCCAACACGTCATCTTCTTGGTAGATAAC
ATTCCCATTAGAGTGTTCAAAAATGCTGAATCTCTTGGAGTTCCCTTCCC
TGAAAACCAACCAATGAAGATTTACTCAAGTCTTTGGAATGCTGATGACT
GGGCTACAAGAGGAGGGTTGGTGAAAACTGACTGGACTAAGGCTCCTTTC
ACAGCATATTACCGTAACTTCAGAGCCATTCCCTGTAACAACTGTGGCTC
TAAACGGTCATCAAGCTCCTCAGTTTNNNATGCTCAGCGTCAATGGCAGC
CTAGAGACGAGCTTGATGCCACAAGCAGAAGAAGACTCAGATGGGTTCAG
AAATATTTTATGATTTATAACTATTGCACTGATTTAAAACGATTCCCACA
AGGCTTTCCTTCTGAGTGCAGACAACACTAGCTGAAGTTGATGACTGGGA
CTCTGTGGTTGGTTTTGAGCAGTATTCTTTGTTTTGTAATAAATCTCATT
CTTGTTTCTTTCTTTCTTGTTACTTCGTTTGTTTGATCACTTGAGGTTTT
GTGTGTTTGTATATTTCATTGCATAGAATAAAAGTTTTCTTTCAGTTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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