CK937537

Overview
NameCK937537
Unique NameCK937537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2041 contig Csv1_Contig2041:1..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK937537 vs. ExPASy Swiss-Prot
Match: ATB54_ARATH (Homeobox-leucine zipper protein ATHB-54 OS=Arabidopsis thaliana GN=ATHB-54 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.553e-44
Identity = 102/207 (49.28%), Postives = 130/207 (62.80%), Query Frame = 3 
Query:   18 SNMSRKRDKPYPSRHD----ANSXXXXXXXXXXXXXXXXXXYAKPLPPPAVVVMGLPPNCSVLDLKSRFEIYGAISRIRIDRNRLGYITYRTKDSXXXXXXXXXXXSFGITVDSQKVQVLWATDPLAQWKEAVKSGANKDIGS--SSKLLRAEVPLSRHGRGIKLASAIVNPKT------SGDG---SSALEVPFRGREIVAYDDIL 593
            S+MSRKRDKPY +RH     +                      KP PPPA+VVMGLP NCSVL+LKSRFEIYG+ISRIRI ++ +G ++YRT +S           SFGI++DS+K++V+WATDPL +WKE V +G  K+  S  SSKLLR  +PL +HGR  +LASAIVNP++      SGDG   S A     + R IV YDDI+
Sbjct:  289 SSMSRKRDKPYTNRHTPARISKRRRPWAPSSSEHDEIIDKPITKPPPPPALVVMGLPANCSVLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVWATDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVNPRSDNTKGISGDGGISSPATTSEVKQRNIVTYDDIV 495
The following BLAST results are available for this feature:
BLAST of CK937537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATB54_ARATH3.553e-4449.28Homeobox-leucine zipper protein ATHB-54 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004779_E01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937537 ID=CK937537; Name=CK937537; organism=Citrus sinensis; type=EST; length=850bp
GGGGTTATTCAAGTTTTTCTAACATGAGTCGCAAGCGAGACAAGCCCTAC
CCCTCCCGCCACGACGCTAATTCAGCCCCAAAACGACGTCGTCCTCTCCC
TCGTCCCGCCGCCGACGATGATAAGCCATACGCCAAGCCGTTGCCACCTC
CAGCCGTGGTGGTGATGGGCCTGCCGCCGAACTGCTCGGTGCTTGATTTG
AAGTCGAGGTTTGAGATCTACGGCGCCATCTCCCGCATCCGCATCGATCG
CAATCGTCTCGGATACATTACCTACCGGACAAAAGATTCTGCTGAAGCTG
CCATTGCTGCTGCCCTTGATGCCTCCTTCGGCATCACAGTTGATTCACAA
AAGGTCCAGGTTTTATGGGCAACAGATCCTCTAGCCCAATGGAAGGAAGC
AGTGAAGAGTGGTGCCAATAAGGACATTGGTTCATCTTCCAAGCTTTTGC
GTGCTGAGGTGCCTCTCAGCAGACATGGAAGAGGCATTAAGCTTGCTTCA
GCTATTGTTAACCCCAAAACTAGCGGTGATGGTTCTTCAGCTTTAGAGGT
GCCTTTCAGAGGCAGAGAGATCGTCGCTTATGATGACATCCTGTAACTTC
AGAACTGATATTTGTGAGGATTTATCCTCCTTTGTAATATTAGATTTGAG
TTTAGTTTTAGTTAGAGTAGGTGGGTATGAAGTATGTGTAGCTAAATGTT
GGAAGGGCGGTAGAGTTGGTGAAAATTGTTTGTTGCGGCGGCTTTGGTTT
CTGGTTTTTTCATTTAAACTGGTGGCCAAAGCTGTCTAGCTTAGATTTGA
TTTCTGGTTCTTTGTTGTGTAATTGTTCTATTTAATGAGAATTCAAGTGT
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