CK937536

Overview
NameCK937536
Unique NameCK937536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937536_ssr5 microsatellite CK937536_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7731 contig Csv1_Contig7731:56..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: SEC14_YARLI (SEC14 cytosolic factor OS=Yarrowia lipolytica GN=SEC14 PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 9.321e-29
Identity = 62/140 (44.29%), Postives = 93/140 (66.43%), Query Frame = 1
Query:  400 ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSK 819
            +R DD   +LRFL+ARKFD+  A+ MW    +WRKEFG +TI+EDF +KE  EV   YP  YH  DK+GRPV++E +GKV+ +++ ++TT +R +R  V  +E     + PAC+      I++S +ILD++GV L + S+
Sbjct:   50 DRTDDA-TLLRFLRARKFDVPLAQEMWENCEKWRKEFGTNTILEDFWYKEKKEVAKLYPQYYHKTDKDGRPVYVENVGKVNIHEMYKITTQERMLRNLVWEYESFVRHRLPACSRVVGHLIETSCTILDLKGVSLSSASQ 188          
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: SEC14_KLULA (SEC14 cytosolic factor OS=Kluyveromyces lactis GN=SEC14 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.114e-27
Identity = 61/159 (38.36%), Postives = 99/159 (62.26%), Query Frame = 1
Query:  334 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKN 810
            D E+   +  FR+  +++ L  +   D   +LRFL+ARKFD++ +K M+    +WRKEFGVDTI EDF ++E   V  YYP  YH  D +GRPV+IE LG V+  ++ ++TT +R ++  V  +E     + PAC+  A   +++S +ILD++G+ + +
Sbjct:   28 DSEQEAKLKEFRE--LLESLGYKERLDDSTLLRFLRARKFDLEASKIMYENCEKWRKEFGVDTIFEDFHYEEKPLVAKYYPQYYHKTDNDGRPVYIEELGSVNLTQMYKITTQERMLKNLVWEYEAFVRYRLPACSRKAGYLVETSCTILDLKGISISS 184          
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: SEC14_CANAL (SEC14 cytosolic factor OS=Candida albicans GN=SEC14 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.488e-26
Identity = 63/155 (40.65%), Postives = 97/155 (62.58%), Query Frame = 1
Query:  340 EELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 804
            E+   +D FRQ L   EL  +   D   +LRFL+ARKFDI KA  M+    +WR++FGV+TI++DF ++E   V   YP  YH  DK+GRPV+ E LGKVD  K++++TT +R ++  V  +E     + PAC+  A   +++S ++LD+ G+ +
Sbjct:   32 EQKTTLDIFRQQLT--ELGYKDRLDDASLLRFLRARKFDIQKAIDMFVACEKWREDFGVNTILKDFHYEEKPIVAKMYPTYYHKTDKDGRPVYFEELGKVDLVKMLKITTQERMLKNLVWEYEAMCQYRLPACSRKAGYLVETSCTVLDLSGISV 184          
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: SEC14_SCHPO (Sec14 cytosolic factor OS=Schizosaccharomyces pombe GN=sec14 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.330e-26
Identity = 58/135 (42.96%), Postives = 91/135 (67.41%), Query Frame = 1
Query:  400 ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 804
            ER DD   +LRFL+ARKF++ ++  M+ +  +WRKEFGVD ++++F + E   V  YYP  YH  D +GRPV++E+LG +D  KL Q+TT +R ++  V  +E     +FPAC+  A   I++S +I+D++GVG+
Sbjct:   46 ERLDDA-TLLRFLRARKFNLQQSLEMFIKCEKWRKEFGVDDLIKNFHYDEKEAVSKYYPQFYHKTDIDGRPVYVEQLGNIDLKKLYQITTPERMMQNLVYEYEMLALKRFPACSRKAGGLIETSCTIMDLKGVGI 179          
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: SEC14_CANGA (SEC14 cytosolic factor OS=Candida glabrata GN=SEC14 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.655e-26
Identity = 56/137 (40.88%), Postives = 89/137 (64.96%), Query Frame = 1
Query:  400 ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKN 810
            ER DD   +LRFL+ARKFD+  AK M+    +WRKE+G +TIM+DF + E   V  YYP  YH  DK+GRPV+ E LG V+  ++ ++TT +R ++  V  +E     + PAC+ AA   +++S +++D++G+ + +
Sbjct:   49 ERLDD-STLLRFLRARKFDVALAKEMFENCEKWRKEYGTNTIMQDFHYDEKPLVAKYYPQYYHKTDKDGRPVYFEELGAVNLTEMEKITTQERMLKNLVWEYESVVNYRLPACSRAAGYLVETSCTVMDLKGISISS 184          
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: SEC14_YEAST (SEC14 cytosolic factor OS=Saccharomyces cerevisiae GN=SEC14 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 7.385e-26
Identity = 56/147 (38.10%), Postives = 94/147 (63.95%), Query Frame = 1
Query:  370 QSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKN 810
            + L+ D    ER DD   +LRFL+ARKFD+  AK M+    +WRK++G DTI++DF + E   +  +YP  YH  DK+GRPV+ E LG V+ +++ +VT+ +R ++  V  +E     + PAC+ AA   +++S +I+D++G+ + +
Sbjct:   41 RKLLEDAGFIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISS 186          
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: YKJ1_YEAST (CRAL-TRIO domain-containing protein YKL091C OS=Saccharomyces cerevisiae GN=YKL091C PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.393e-24
Identity = 62/163 (38.04%), Postives = 104/163 (63.80%), Query Frame = 1
Query:  340 EELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF------KEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKN 810
            E+ +A+  FR S+++++   ER DD   +LRFL+ARKFDI+ +  M+ E  +WR+E+G +TI+ED+E       KE  ++   YP  YH VDK+GRP++ E LG ++  K+ ++TT  + +R  V+ +E     + PAC+  A   I++S ++LD++G+ L N
Sbjct:   28 EQEEALLQFR-SILLEKNYKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSN 188          
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: SEC14_ASHGO (SEC14 cytosolic factor OS=Ashbya gossypii GN=SEC14 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.179e-23
Identity = 53/131 (40.46%), Postives = 84/131 (64.12%), Query Frame = 1
Query:  412 DYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 804
            D   +LRFL+ARKFD+  A+ M+    +WRKE GVDTI EDF ++E   V  +YP  YH  DK+GRPV+IE LG V+  ++ ++TT +R ++  +  +E     + PA +  A   +++S +ILD++G+ +
Sbjct:   55 DDSTLLRFLRARKFDVAAARAMFENCEKWRKENGVDTIFEDFHYEEKPLVAKFYPQYYHKTDKDGRPVYIEELGAVNLTEMYKITTQERMLKNLIWEYESFSRYRLPASSRQADCLVETSCTILDLKGISI 185          
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: RETM_ANOGA (Protein real-time OS=Anopheles gambiae GN=retm PE=3 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 7.660e-15
Identity = 45/133 (33.83%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  412 DYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKN 810
            DY  +LRFL+AR F IDKA  M  E LQWRKE  +D+I+ +++   + E   Y+P G+H  DK+GRP++I RLG +D   L++    D  ++  +   E+   +   A  +  K  + +   ++D+ G+ +++
Sbjct:  254 DYQTLLRFLRARDFSIDKATGMLQESLQWRKEQRIDSILGEYKTPAVVE--KYFPGGWHHHDKDGRPLYILRLGTMDVKGLLKSVGEDELLKLTLHICEEGLRLMKEATKLFGK-PVWNWCLLVDLDGLSMRH 383          
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: RETM_AEDAE (Protein real-time OS=Aedes aegypti GN=retm PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.802e-14
Identity = 44/133 (33.08%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  412 DYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKN 810
            DY  +LRFL+AR F I+KA  M  E LQWR+E  +D I+ +++   + E   Y+P G+H  DK+GRP++I RLG +D   L++    D  ++  +   E+   +   A  +  K  I +   ++D+ G+ +++
Sbjct:  251 DYQTLLRFLRARDFSIEKAASMLQESLQWREEHRIDDILGEYKTPVVVE--KYFPGGWHHHDKDGRPLYILRLGNMDVKGLLKSVGEDELLKLTLHICEEGLKLMKEATKLFGK-PIWNWCLLVDLDGLSMRH 380          
The following BLAST results are available for this feature:
BLAST of CK937536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SEC14_YARLI9.321e-2944.29SEC14 cytosolic factor OS=Yarrowia lipolytica GN=S... [more]
SEC14_KLULA5.114e-2738.36SEC14 cytosolic factor OS=Kluyveromyces lactis GN=... [more]
SEC14_CANAL1.488e-2640.65SEC14 cytosolic factor OS=Candida albicans GN=SEC1... [more]
SEC14_SCHPO4.330e-2642.96Sec14 cytosolic factor OS=Schizosaccharomyces pomb... [more]
SEC14_CANGA5.655e-2640.88SEC14 cytosolic factor OS=Candida glabrata GN=SEC1... [more]
SEC14_YEAST7.385e-2638.10SEC14 cytosolic factor OS=Saccharomyces cerevisiae... [more]
YKJ1_YEAST1.393e-2438.04CRAL-TRIO domain-containing protein YKL091C OS=Sac... [more]
SEC14_ASHGO1.179e-2340.46SEC14 cytosolic factor OS=Ashbya gossypii GN=SEC14... [more]
RETM_ANOGA7.660e-1533.83Protein real-time OS=Anopheles gambiae GN=retm PE=... [more]
RETM_AEDAE3.802e-1433.08Protein real-time OS=Aedes aegypti GN=retm PE=3 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004779_D12 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937536 ID=CK937536; Name=CK937536; organism=Citrus sinensis; type=EST; length=838bp
GGGGGATCGATCGATCGATTGTTTGACCGATCCATTCATTGCTGAAAGCG
CAGAGTGTCAGTGCCGCGTTTCCCTCTCACGCGCCACCGAGAGATGTCGG
GTCCTCTCGATCGGTTCGCTAGGCCTTGTTTTGAGGGATTCTCAGGAAGT
GATGAGAGGAGAGAAAGGAAATCTGATTTTGAGAACTCTGAGGATGAAAG
GCGGACAAGGATTGGGTCTCTGAAGAAGAAAGCCTTAAATGCATCCACTA
AGTTCAAGCATTCTCTGAAGAAAAAGAGCAGTAGAAGGAAAAGTGATGGC
CGGGTCAGCTCTGTTTCAATTGAGGATGTCCGTGATGTTGAGGAGCTTCA
GGCTGTTGATGCATTTAGACAATCATTAATTATGGATGAATTGCTGCCTG
AGCGACATGATGATTATCACATGATGTTAAGGTTCTTAAAAGCTAGGAAG
TTTGATATTGACAAAGCAAAGCATATGTGGGCCGAGATGCTTCAATGGAG
GAAGGAATTCGGTGTTGACACTATTATGGAGGATTTTGAGTTCAAAGAAA
TAAATGAAGTTTTGAGTTATTACCCTCATGGTTACCATGGTGTGGACAAG
GAGGGAAGACCTGTTCACATTGAAAGATTGGGAAAAGTTGATTCTAACAA
ACTTATGCAAGTTACCACTATGGATCGATATATAAGGTATCATGTTCAAG
GATTTGAAAAAGCCTTTGCAGTAAAGTTTCCAGCTTGTACAATTGCTGCA
AAGAGGCACATTGATTCGAGCACTTCAATTTTAGATGTTCAAGGCGTGGG
CCTTAAGAATTTTTCCAAGAATGCTCGTGAGCTCATTT
back to top