CK937534

Overview
NameCK937534
Unique NameCK937534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1_PHAVU (Serine/threonine-protein phosphatase PP1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.052e-17
Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+RRLVTIFSAPNYGGEFDNAGALLSV++SLVCSFEILKPAD
Sbjct:  250 EFFAKRRLVTIFSAPNYGGEFDNAGALLSVDDSLVCSFEILKPAD 294          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1_BRANA (Serine/threonine-protein phosphatase PP1 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.160e-16
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPA 135
            EFFA+RRLVTIFSAPNYGGEFDNAGALLSV+ESLVCSFEI+KPA
Sbjct:  194 EFFAKRRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFEIMKPA 237          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP18_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 8 OS=Arabidopsis thaliana GN=TOPP8 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.160e-16
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPA 135
            EFFA+RRLVTIFSAPNYGGEFDNAGALLSV+ESLVCSFEI+KPA
Sbjct:  258 EFFAKRRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFEIMKPA 301          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP19_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 9 OS=Arabidopsis thaliana GN=TOPP9 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.514e-16
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPA 135
            EFFA+RRLVTIFSAPNYGGEFDNAGALLSV++SLVCSFEILKPA
Sbjct:  258 EFFAKRRLVTIFSAPNYGGEFDNAGALLSVDQSLVCSFEILKPA 301          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP12_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Arabidopsis thaliana GN=TOPP2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.851e-14
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA R+LVTIFSAPNY GEFDNAGA++SV+ESL+CSF+ILKPAD
Sbjct:  262 EFFADRQLVTIFSAPNYCGEFDNAGAMMSVDESLMCSFQILKPAD 306          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1A_RAT (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Rattus norvegicus GN=Ppp1ca PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 35/45 (77.78%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+E+L+CSF+ILKPAD
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAD 300          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1A_RABIT (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Oryctolagus cuniculus GN=PPP1CA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 35/45 (77.78%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+E+L+CSF+ILKPAD
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAD 300          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1A_MOUSE (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Mus musculus GN=Ppp1ca PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 35/45 (77.78%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+E+L+CSF+ILKPAD
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAD 300          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1A_HUMAN (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 35/45 (77.78%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+E+L+CSF+ILKPAD
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAD 300          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1A_CANFA (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Canis familiaris GN=PPP1CA PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 35/45 (77.78%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+E+L+CSF+ILKPAD
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAD 300          
The following BLAST results are available for this feature:
BLAST of CK937534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
PP1_PHAVU3.052e-1793.33Serine/threonine-protein phosphatase PP1 OS=Phaseo... [more]
PP1_BRANA1.160e-1693.18Serine/threonine-protein phosphatase PP1 (Fragment... [more]
PP18_ARATH1.160e-1693.18Serine/threonine-protein phosphatase PP1 isozyme 8... [more]
PP19_ARATH1.514e-1693.18Serine/threonine-protein phosphatase PP1 isozyme 9... [more]
PP12_ARATH1.851e-1482.22Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PP1A_RAT2.418e-1477.78Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_RABIT2.418e-1477.78Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_MOUSE2.418e-1477.78Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_HUMAN2.418e-1477.78Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_CANFA2.418e-1477.78Serine/threonine-protein phosphatase PP1-alpha cat... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_D09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937534 ID=CK937534; Name=CK937534; organism=Citrus sinensis; type=EST; length=646bp
GGGGAATTTTTTGCTAGACGAAGATTGGTTACAATATTTTCAGCTCCAAA
CTATGGAGGGGAGTTTGACAACGCAGGAGCTCTATTGAGTGTCAACGAAA
GCCTAGTGTGTTCGTTTGAGATATTGAAGCCTGCTGATAAATCGCTTCCA
AGTTCTTCTAATTCAAAGTTGCCTCTTAAAAAGCCCCCTAAAACTGGGAA
GATCTGACGTGCAATAAGGGGTTTCTGGAGATTTATTTTAGTTCGAATAG
GAGATAAAGGAAGCTCGATTCATGCTAAATTTTTTGATTCTGTCAAGATT
ATGGGTTTCGAAAGCAGTGTGCCTTCTTTCAGATCACAGGTTACTGATAA
TTTAATAGCAATCAAAAGTATTATGGGGGAAAAAAAGAATCTGTAAATTA
TTCACAAGCTATCTTCCATGGAGGAACAGAAATCGTTGCATTTCACATCC
TTTGATCTCTTCTTGTAACAGCTGATTGGTGTGAGAATGATTTGAGGATG
GCCTGACTTGATTCTTGTCTACCGAGTATTTGTACATTATATTGTGCAAT
TTGTGCTTGATTGGGTTACTCCTTTTGCCCAATTGTCTATTAATACTCTT
AAAGGCATTTAAAAAAAAAAANNNNAAAAAAAAAAAAAAAAAAAAA
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