CK937529

Overview
NameCK937529
Unique NameCK937529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4536 contig Csv1_Contig4536:154..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.181e-55
Identity = 102/114 (89.47%), Postives = 111/114 (97.37%), Query Frame = 3 
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 452
            RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYGSDKKTRHYLPNGFKKFVVHNT ELELLMMHNRTYCAEIAH+VST+KRK IVERA+QLD+VVTN+LARLRSQEDE
Sbjct:   20 RPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133
[Close]
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.656e-55
Identity = 99/114 (86.84%), Postives = 110/114 (96.49%), Query Frame = 3 
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 452
            RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYGSDKKTRHYLPNGFKKF+VHNT ELELLMMHNRTYCAEIAH++ST+KRK IVERA+QLD+VV+NKL RLRSQEDE
Sbjct:   20 RPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133
[Close]
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_SPOFR (60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.268e-41
Identity = 82/114 (71.93%), Postives = 95/114 (83.33%), Query Frame = 3 
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 452
            R QSDR   +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LPNGF+K +VHN +ELE+LMM NR YCAEIAH VS++KRK IVERA QL I VTN  ARLRSQE+E
Sbjct:   21 RHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQENE 134
[Close]
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.824e-41
Identity = 79/114 (69.30%), Postives = 99/114 (86.84%), Query Frame = 3 
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 452
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 2.824e-41
Identity = 79/114 (69.30%), Postives = 99/114 (86.84%), Query Frame = 3 
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 452
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_MOUSE (60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.824e-41
Identity = 79/114 (69.30%), Postives = 99/114 (86.84%), Query Frame = 3 
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 452
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_MACFA (60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 2.824e-41
Identity = 79/114 (69.30%), Postives = 99/114 (86.84%), Query Frame = 3 
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 452
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 2.824e-41
Identity = 79/114 (69.30%), Postives = 99/114 (86.84%), Query Frame = 3 
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 452
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_BOVIN (60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 3.689e-41
Identity = 78/114 (68.42%), Postives = 99/114 (86.84%), Query Frame = 3 
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 452
            R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I +TN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE 135
[Close]
BLAST of CK937529 vs. ExPASy Swiss-Prot
Match: RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus GN=rpl32 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.391e-40
Identity = 78/114 (68.42%), Postives = 97/114 (85.09%), Query Frame = 3 
Query:  111 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 452
            R QSDR + ++ NWR+P+GID+RVR  FKG  LMPNIGYGS+KKT+H LP+GFKKF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:   22 RHQSDRYVKIRRNWRKPRGIDNRVRSGFKGQMLMPNIGYGSNKKTKHMLPSGFKKFLVHNVKELEVLLMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135
The following BLAST results are available for this feature:
BLAST of CK937529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL321_ARATH1.181e-5589.4760S ribosomal protein L32-1 OS=Arabidopsis thalian... [more]
RL322_ARATH7.656e-5586.8460S ribosomal protein L32-2 OS=Arabidopsis thalian... [more]
RL32_SPOFR1.268e-4171.9360S ribosomal protein L32 OS=Spodoptera frugiperda... [more]
RL32_RAT2.824e-4169.3060S ribosomal protein L32 OS=Rattus norvegicus GN=... [more]
RL32_PIG2.824e-4169.3060S ribosomal protein L32 OS=Sus scrofa GN=RPL32 P... [more]
RL32_MOUSE2.824e-4169.3060S ribosomal protein L32 OS=Mus musculus GN=Rpl32... [more]
RL32_MACFA2.824e-4169.3060S ribosomal protein L32 OS=Macaca fascicularis G... [more]
RL32_HUMAN2.824e-4169.3060S ribosomal protein L32 OS=Homo sapiens GN=RPL32... [more]
RL32_BOVIN3.689e-4168.4260S ribosomal protein L32 OS=Bos taurus GN=RPL32 P... [more]
RL32_ICTPU2.391e-4068.4260S ribosomal protein L32 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_F07 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937529 ID=CK937529; Name=CK937529; organism=Citrus sinensis; type=EST; length=628bp
GGGGCTCGCGGCCAAGCTGAACCCTAGCTCAAATCACTGGGAAGAAGGTA
AGGAAGATGGCGGTTCCGTTACTGTCGAAGAAGATAGTGAAGAAGAGGCT
GAAGTTCAAGAGGCCTCAGAGCGATCGCAAGATCTCCGTCAAGGAAAATT
GGCGCAGACCAAAGGGTATTGATTCCCGGGTGCGAAGAAAGTTCAAGGGA
TGCACTCTAATGCCCAACATTGGTTATGGTTCGGACAAGAAGACACGCCA
CTATCTTCCAAATGGTTTCAAGAAATTTGTGGTGCACAATACGAAAGAGC
TTGAATTGTTGATGATGCACAACAGGACCTACTGTGCTGAAATTGCCCAT
GATGTTTCCACGAGGAAGAGGAAAGAGATTGTGGAGCGAGCTGCCCAACT
TGATATTGTTGTGACTAACAAGCTTGCTAGATTGAGAAGCCAGGAAGATG
AATGAGATTAAACAATCTGTTCTTTTTAGTAGTAGTGAGTCTTGTTTTGT
ACGCTTTATCAAAATTTTGAAAATTTTGACTTACAAAGATACGACCGTTT
GTGATTTTTTATTTTTTTGGGATGAGTGATAATACAGTAGTTTTTATTTC
ATAGAAAAAAAAAAAAAAAAAAAAAAAA
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