CK937526

Overview
NameCK937526
Unique NameCK937526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6270 contig Csv1_Contig6270:659..1356. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: CSN2_ARATH (COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2 PE=1 SV=1)

HSP 1 Score: 380.563 bits (976), Expect = 4.470e-105
Identity = 190/232 (81.90%), Postives = 202/232 (87.07%), Query Frame = 3
Query:    3 AIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQ 698
            AIEIQ+YTET                 SAIPHPRIMGIIRECGGKMHMAERQW +AATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFE+ILKSNR+TIMDDPFIRNY+EDLLK VRTQVLLKLIKPYT+I IPFISKELNVPE DV +LLVSLILD+RIDGHID++NR L RGD   G K + A+DKWNSQ
Sbjct:  195 AIEIQIYTETKDNKKLKQLYHKALAIKSAIPHPRIMGIIRECGGKMHMAERQWEEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFERILKSNRRTIMDDPFIRNYMEDLLKKVRTQVLLKLIKPYTKIGIPFISKELNVPETDVTELLVSLILDSRIDGHIDEMNRYLLRGDSGNGRKLHKAVDKWNSQ 426          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: CSN2_DICDI (COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum GN=csn2 PE=1 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.182e-89
Identity = 167/233 (71.67%), Postives = 185/233 (79.40%), Query Frame = 3
Query:    3 AIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD-RSKGMKKYTAIDKWNSQ 698
            A+EIQMYTET                 SAIPHPRIMGIIRECGGKMHMAE++W  A TDFFEAFKNYDEAGN RRIQCLKYLVLA MLM S +NPFD  EAKPYKNDP+ILAMTNL+ AY++N+I  FEKILK NRKTIMDDPFIR YIEDLL+N+RTQVLLKL+KPYTRIRI FISKELN+P  DVE LLVSLILDN+I G IDQVN+ LE    +S    KYT+I KW +Q
Sbjct:  203 ALEIQMYTETKNNKKLKDLYKKALEIKSAIPHPRIMGIIRECGGKMHMAEKEWEKAHTDFFEAFKNYDEAGNSRRIQCLKYLVLACMLMLSTINPFDSTEAKPYKNDPDILAMTNLVMAYEKNDIYAFEKILKDNRKTIMDDPFIRMYIEDLLRNIRTQVLLKLLKPYTRIRISFISKELNIPSSDVESLLVSLILDNKIRGSIDQVNQQLELDTAKSSAYWKYTSIHKWANQ 435          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: CSN2_DANRE (COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 6.710e-85
Identity = 154/232 (66.38%), Postives = 180/232 (77.59%), Query Frame = 3
Query:    3 AIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQ 698
            A+EIQMYT                   SAIPHP IMG+IRECGGKMH+ E ++  A TDFFEAFKNYDE+G+ RR  CLKYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL++AYQ N+I EFEKILK+N   IMDDPFIR +IE+LL+N+RTQVL+KLIKPYTRI IPFISKELN+   DVE LLV  ILDN I+G IDQVN+LLE   + +G  +YTA+DKW +Q
Sbjct:  199 ALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTINGRIDQVNQLLELDHQKRGGARYTALDKWTNQ 430          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: CSN2_XENLA (COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis GN=csn2 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.145e-84
Identity = 154/232 (66.38%), Postives = 179/232 (77.16%), Query Frame = 3
Query:    3 AIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQ 698
            A+EIQMYT                   SAIPHP IMG+IRECGGKMH+ E ++  A TDFFEAFKNYDE+G+ RR  CLKYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL++AYQ N+I EFEKILK+N   IMDDPFIR +IE+LL+N+RTQVL+KLIKPYTRI IPFISKELN+   DVE LLV  ILDN I G IDQVN+LLE   + +G  +YTA+DKW +Q
Sbjct:  197 ALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQ 428          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: CSN2_RAT (COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.145e-84
Identity = 154/232 (66.38%), Postives = 179/232 (77.16%), Query Frame = 3
Query:    3 AIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQ 698
            A+EIQMYT                   SAIPHP IMG+IRECGGKMH+ E ++  A TDFFEAFKNYDE+G+ RR  CLKYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL++AYQ N+I EFEKILK+N   IMDDPFIR +IE+LL+N+RTQVL+KLIKPYTRI IPFISKELN+   DVE LLV  ILDN I G IDQVN+LLE   + +G  +YTA+DKW +Q
Sbjct:  199 ALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQ 430          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: CSN2_MOUSE (COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.145e-84
Identity = 154/232 (66.38%), Postives = 179/232 (77.16%), Query Frame = 3
Query:    3 AIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQ 698
            A+EIQMYT                   SAIPHP IMG+IRECGGKMH+ E ++  A TDFFEAFKNYDE+G+ RR  CLKYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL++AYQ N+I EFEKILK+N   IMDDPFIR +IE+LL+N+RTQVL+KLIKPYTRI IPFISKELN+   DVE LLV  ILDN I G IDQVN+LLE   + +G  +YTA+DKW +Q
Sbjct:  199 ALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQ 430          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: CSN2_HUMAN (COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.145e-84
Identity = 154/232 (66.38%), Postives = 179/232 (77.16%), Query Frame = 3
Query:    3 AIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQ 698
            A+EIQMYT                   SAIPHP IMG+IRECGGKMH+ E ++  A TDFFEAFKNYDE+G+ RR  CLKYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL++AYQ N+I EFEKILK+N   IMDDPFIR +IE+LL+N+RTQVL+KLIKPYTRI IPFISKELN+   DVE LLV  ILDN I G IDQVN+LLE   + +G  +YTA+DKW +Q
Sbjct:  199 ALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQ 430          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: CSN2_DROME (COP9 signalosome complex subunit 2 OS=Drosophila melanogaster GN=alien PE=1 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 1.074e-74
Identity = 138/232 (59.48%), Postives = 170/232 (73.28%), Query Frame = 3
Query:    3 AIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNSQ 698
            A+EIQMYT                   SAIPHP IMG+IRECGGKMH+ E ++  A TDFFEAFKNYDE+G+ RR  CLKYLVLANMLM+S +NPFD QEAKPYKNDPEILAMTNL+ +YQ N+I EFE IL+ +R  IM D FIR +IEDLL+N+RTQVL+KLI+PY  I IPFI+  LN+   +VE LLVS ILD+ I G IDQVN++L+    +    +Y A++KW++Q
Sbjct:  200 ALEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVNSYQNNDINEFETILRQHRSNIMADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDDTIKGRIDQVNQVLQLDKINSSASRYNALEKWSNQ 431          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: CSN2_CAEEL (COP9 signalosome complex subunit 2 OS=Caenorhabditis elegans GN=csn-2 PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.608e-62
Identity = 117/223 (52.47%), Postives = 162/223 (72.65%), Query Frame = 3
Query:    3 AIEIQMYTE---TXXXXXXXXXXXXXXXXXSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGM 662
            A+EIQMYTE                     SAIPHP I+G IRECGGKMH+ + ++ DA TDFFEAFKNYDE+G+ RR  CLKYLVLANML++S++NPFD QEAKP+KN+PEI+AMT ++ AYQ N+I  FE+I+ +++ +IM DPFIR + E+L+ N+RTQVLL+LI+PYT +RI ++S++L V +K+V  LLV  ILD+ ++  I++ + ++E     K M
Sbjct:  196 ALEIQMYTEQKNNKALKWVYELATQAIHTKSAIPHPLILGTIRECGGKMHLRDGRFLDAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLIKSDINPFDSQEAKPFKNEPEIVAMTQMVQAYQDNDIQAFEQIMAAHQDSIMADPFIREHTEELMNNIRTQVLLRLIRPYTNVRISYLSQKLKVSQKEVIHLLVDAILDDGLEAKINEESGMIEMPKNKKKM 418          
BLAST of CK937526 vs. ExPASy Swiss-Prot
Match: CSN2_SCHPO (COP9 signalosome complex subunit 2 OS=Schizosaccharomyces pombe GN=csn2 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.505e-60
Identity = 109/210 (51.90%), Postives = 153/210 (72.86%), Query Frame = 3
Query:    3 AIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 632
            ++EIQMY++                  +AIPHPRIMGIIRECGGKMHM E QW++A T+FFE+FK+YDEAG+  RI+ LKYLVLANML ESE+NPFD  E +PYK++P I+AMT L+ AYQ  +I   E+IL++ +  I+DD FIR Y++ +L ++R+QVL++L+KPYT +++  ++K+L V    +EQ LV LI+D R++G ID VN +
Sbjct:  201 SLEIQMYSDIEDNKRLKELYQSSLRVKTAIPHPRIMGIIRECGGKMHMQENQWSEAQTNFFESFKSYDEAGSSDRIRVLKYLVLANMLSESEINPFDSPETQPYKDNPHIIAMTKLVEAYQIRDITAVERILQTYQHDILDDDFIRQYVDKILYSIRSQVLIELVKPYTSVKLSLLAKKLGVSISIIEQALVGLIIDERVNGKIDMVNEV 410          
The following BLAST results are available for this feature:
BLAST of CK937526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CSN2_ARATH4.470e-10581.90COP9 signalosome complex subunit 2 OS=Arabidopsis ... [more]
CSN2_DICDI1.182e-8971.67COP9 signalosome complex subunit 2 OS=Dictyosteliu... [more]
CSN2_DANRE6.710e-8566.38COP9 signalosome complex subunit 2 OS=Danio rerio ... [more]
CSN2_XENLA1.145e-8466.38COP9 signalosome complex subunit 2 (Fragment) OS=X... [more]
CSN2_RAT1.145e-8466.38COP9 signalosome complex subunit 2 OS=Rattus norve... [more]
CSN2_MOUSE1.145e-8466.38COP9 signalosome complex subunit 2 OS=Mus musculus... [more]
CSN2_HUMAN1.145e-8466.38COP9 signalosome complex subunit 2 OS=Homo sapiens... [more]
CSN2_DROME1.074e-7459.48COP9 signalosome complex subunit 2 OS=Drosophila m... [more]
CSN2_CAEEL1.608e-6252.47COP9 signalosome complex subunit 2 OS=Caenorhabdit... [more]
CSN2_SCHPO1.505e-6051.90COP9 signalosome complex subunit 2 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_F02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937526 ID=CK937526; Name=CK937526; organism=Citrus sinensis; type=EST; length=698bp
GGGCAATCGAGATTCAAATGTACACTGAAACCAAAAATAACAAGAAGCTA
AAGCAATTATACCAGAAAGCTCTTGCTATCAAGTCAGCCATACCACATCC
AAGGATCATGGGAATAATTCGTGAATGTGGTGGGAAGATGCACATGGCAG
AACGTCAATGGGCAGATGCAGCAACTGATTTCTTTGAAGCATTTAAGAAC
TATGACGAAGCAGGGAACCAGAGGCGTATTCAATGCTTGAAGTATCTGGT
TCTGGCGAATATGCTGATGGAATCTGAAGTGAATCCATTTGATGGACAAG
AGGCAAAGCCATATAAGAATGATCCTGAGATTCTGGCTATGACAAATCTG
ATCGCAGCATACCAAAGAAATGAGATAATAGAGTTTGAAAAAATCCTCAA
GAGCAACAGAAAGACTATCATGGATGATCCATTTATTCGGAATTACATTG
AAGATCTGTTGAAGAATGTCAGGACTCAAGTCTTGCTTAAGCTTATCAAG
CCCTACACAAGGATCCGGATCCCCTTCATATCTAAGGAGCTCAATGTGCC
AGAAAAAGATGTTGAGCAGTTGTTGGTTTCACTTATTCTGGATAATCGAA
TTGACGGACATATTGATCAAGTGAACCGGCTATTAGAGCGAGGAGACAGG
TCAAAGGGAATGAAGAAGTATACTGCCATAGACAAATGGAACTCGCAG
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