CK937514

Overview
NameCK937514
Unique NameCK937514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5288 contig Csv1_Contig5288:489..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK937514 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.378e-11
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 2 
Query:    2 GVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 142
            GVGKVFLEY D  G + A++ ++GRKFGGN V A YYPEDKY   DY
Sbjct:  541 GVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDY 587
The following BLAST results are available for this feature:
BLAST of CK937514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
U2A2B_ARATH7.378e-1163.83Splicing factor U2af large subunit B OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004779_G04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937514 ID=CK937514; Name=CK937514; organism=Citrus sinensis; type=EST; length=288bp
GGGAGTTGGAAAGGTGTTCTTGGAGTATTATGACGCTGTTGGTTGTGCCA
CTGCAAAAAACGCCCTAAGTGGCAGGAAATTTGGAGGCAATACGGTGAAT
GCCTTCTATTACCCGGAAGACAAATACTTCAACAAAGACTATAGTGCCTG
AAGTAGGCTTCCCCCCCCCCCCCCCCCAAAAAAAATTATTTTTATAATAA
AAGTTTACAATGGAAAATTTTCCGCCGGGGGGGTAACGTGGGATGATTNA
NNNNAAAATTATTTTTATAGGGGCTTTTAAGTCAATTG
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