CK937499

Overview
NameCK937499
Unique NameCK937499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937499_ssr5 microsatellite CK937499_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7731 contig Csv1_Contig7731:56..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937499 vs. ExPASy Swiss-Prot
Match: SEC14_YARLI (SEC14 cytosolic factor OS=Yarrowia lipolytica GN=SEC14 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.231e-27
Identity = 59/132 (44.70%), Postives = 88/132 (66.67%), Query Frame = 1
Query:  400 ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTXAAKRHIDSSTSILDVQG 795
            +R DD   +LRFL+ARKFD+  A+ MW    +WRKEFG +TI+EDF +KE  EV   YP  YH  DK+GRPV++E +GKV+ +++ ++TT +R +R  V  +E     + PAC+      I++S +ILD++G
Sbjct:   50 DRTDDA-TLLRFLRARKFDVPLAQEMWENCEKWRKEFGTNTILEDFWYKEKKEVAKLYPQYYHKTDKDGRPVYVENVGKVNIHEMYKITTQERMLRNLVWEYESFVRHRLPACSRVVGHLIETSCTILDLKG 180          
BLAST of CK937499 vs. ExPASy Swiss-Prot
Match: SEC14_KLULA (SEC14 cytosolic factor OS=Kluyveromyces lactis GN=SEC14 PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.361e-26
Identity = 61/154 (39.61%), Postives = 96/154 (62.34%), Query Frame = 1
Query:  334 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTXAAKRHIDSSTSILDVQG 795
            D E+   +  FR+  +++ L  +   D   +LRFL+ARKFD++ +K M+    +WRKEFGVDTI EDF ++E   V  YYP  YH  D +GRPV+IE LG V+  ++ ++TT +R ++  V  +E     + PAC+  A   +++S +ILD++G
Sbjct:   28 DSEQEAKLKEFRE--LLESLGYKERLDDSTLLRFLRARKFDLEASKIMYENCEKWRKEFGVDTIFEDFHYEEKPLVAKYYPQYYHKTDNDGRPVYIEELGSVNLTQMYKITTQERMLKNLVWEYEAFVRYRLPACSRKAGYLVETSCTILDLKG 179          
BLAST of CK937499 vs. ExPASy Swiss-Prot
Match: SEC14_CANAL (SEC14 cytosolic factor OS=Candida albicans GN=SEC14 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.322e-26
Identity = 63/152 (41.45%), Postives = 95/152 (62.50%), Query Frame = 1
Query:  340 EELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTXAAKRHIDSSTSILDVQG 795
            E+   +D FRQ L   EL  +   D   +LRFL+ARKFDI KA  M+    +WR++FGV+TI++DF ++E   V   YP  YH  DK+GRPV+ E LGKVD  K++++TT +R ++  V  +E     + PAC+  A   +++S ++LD+ G
Sbjct:   32 EQKTTLDIFRQQLT--ELGYKDRLDDASLLRFLRARKFDIQKAIDMFVACEKWREDFGVNTILKDFHYEEKPIVAKMYPTYYHKTDKDGRPVYFEELGKVDLVKMLKITTQERMLKNLVWEYEAMCQYRLPACSRKAGYLVETSCTVLDLSG 181          
BLAST of CK937499 vs. ExPASy Swiss-Prot
Match: SEC14_CANGA (SEC14 cytosolic factor OS=Candida glabrata GN=SEC14 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.505e-25
Identity = 56/132 (42.42%), Postives = 86/132 (65.15%), Query Frame = 1
Query:  400 ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTXAAKRHIDSSTSILDVQG 795
            ER DD   +LRFL+ARKFD+  AK M+    +WRKE+G +TIM+DF + E   V  YYP  YH  DK+GRPV+ E LG V+  ++ ++TT +R ++  V  +E     + PAC+ AA   +++S +++D++G
Sbjct:   49 ERLDD-STLLRFLRARKFDVALAKEMFENCEKWRKEYGTNTIMQDFHYDEKPLVAKYYPQYYHKTDKDGRPVYFEELGAVNLTEMEKITTQERMLKNLVWEYESVVNYRLPACSRAAGYLVETSCTVMDLKG 179          
BLAST of CK937499 vs. ExPASy Swiss-Prot
Match: SEC14_YEAST (SEC14 cytosolic factor OS=Saccharomyces cerevisiae GN=SEC14 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.965e-25
Identity = 56/142 (39.44%), Postives = 91/142 (64.08%), Query Frame = 1
Query:  370 QSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTXAAKRHIDSSTSILDVQG 795
            + L+ D    ER DD   +LRFL+ARKFD+  AK M+    +WRK++G DTI++DF + E   +  +YP  YH  DK+GRPV+ E LG V+ +++ +VT+ +R ++  V  +E     + PAC+ AA   +++S +I+D++G
Sbjct:   41 RKLLEDAGFIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKG 181          
BLAST of CK937499 vs. ExPASy Swiss-Prot
Match: SEC14_SCHPO (Sec14 cytosolic factor OS=Schizosaccharomyces pombe GN=sec14 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.718e-25
Identity = 56/132 (42.42%), Postives = 88/132 (66.67%), Query Frame = 1
Query:  400 ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTXAAKRHIDSSTSILDVQG 795
            ER DD   +LRFL+ARKF++ ++  M+ +  +WRKEFGVD ++++F + E   V  YYP  YH  D +GRPV++E+LG +D  KL Q+TT +R ++  V  +E     +FPAC+  A   I++S +I+D++G
Sbjct:   46 ERLDDA-TLLRFLRARKFNLQQSLEMFIKCEKWRKEFGVDDLIKNFHYDEKEAVSKYYPQFYHKTDIDGRPVYVEQLGNIDLKKLYQITTPERMMQNLVYEYEMLALKRFPACSRKAGGLIETSCTIMDLKG 176          
BLAST of CK937499 vs. ExPASy Swiss-Prot
Match: YKJ1_YEAST (CRAL-TRIO domain-containing protein YKL091C OS=Saccharomyces cerevisiae GN=YKL091C PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.402e-23
Identity = 60/158 (37.97%), Postives = 101/158 (63.92%), Query Frame = 1
Query:  340 EELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF------KEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTXAAKRHIDSSTSILDVQG 795
            E+ +A+  FR S+++++   ER DD   +LRFL+ARKFDI+ +  M+ E  +WR+E+G +TI+ED+E       KE  ++   YP  YH VDK+GRP++ E LG ++  K+ ++TT  + +R  V+ +E     + PAC+  A   I++S ++LD++G
Sbjct:   28 EQEEALLQFR-SILLEKNYKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKG 183          
BLAST of CK937499 vs. ExPASy Swiss-Prot
Match: SEC14_ASHGO (SEC14 cytosolic factor OS=Ashbya gossypii GN=SEC14 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.402e-23
Identity = 53/128 (41.41%), Postives = 82/128 (64.06%), Query Frame = 1
Query:  412 DYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTXAAKRHIDSSTSILDVQG 795
            D   +LRFL+ARKFD+  A+ M+    +WRKE GVDTI EDF ++E   V  +YP  YH  DK+GRPV+IE LG V+  ++ ++TT +R ++  +  +E     + PA +  A   +++S +ILD++G
Sbjct:   55 DDSTLLRFLRARKFDVAAARAMFENCEKWRKENGVDTIFEDFHYEEKPLVAKFYPQYYHKTDKDGRPVYIEELGAVNLTEMYKITTQERMLKNLIWEYESFSRYRLPASSRQADCLVETSCTILDLKG 182          
BLAST of CK937499 vs. ExPASy Swiss-Prot
Match: RETM_ANOGA (Protein real-time OS=Anopheles gambiae GN=retm PE=3 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 1.195e-14
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  412 DYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIR 687
            DY  +LRFL+AR F IDKA  M  E LQWRKE  +D+I+ +++   + E   Y+P G+H  DK+GRP++I RLG +D   L++    D  ++
Sbjct:  254 DYQTLLRFLRARDFSIDKATGMLQESLQWRKEQRIDSILGEYKTPAVVE--KYFPGGWHHHDKDGRPLYILRLGTMDVKGLLKSVGEDELLK 343          
BLAST of CK937499 vs. ExPASy Swiss-Prot
Match: RETM_AEDAE (Protein real-time OS=Aedes aegypti GN=retm PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.746e-14
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  412 DYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIR 687
            DY  +LRFL+AR F I+KA  M  E LQWR+E  +D I+ +++   + E   Y+P G+H  DK+GRP++I RLG +D   L++    D  ++
Sbjct:  251 DYQTLLRFLRARDFSIEKAASMLQESLQWREEHRIDDILGEYKTPVVVE--KYFPGGWHHHDKDGRPLYILRLGNMDVKGLLKSVGEDELLK 340          
The following BLAST results are available for this feature:
BLAST of CK937499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SEC14_YARLI1.231e-2744.70SEC14 cytosolic factor OS=Yarrowia lipolytica GN=S... [more]
SEC14_KLULA1.361e-2639.61SEC14 cytosolic factor OS=Kluyveromyces lactis GN=... [more]
SEC14_CANAL2.322e-2641.45SEC14 cytosolic factor OS=Candida albicans GN=SEC1... [more]
SEC14_CANGA1.505e-2542.42SEC14 cytosolic factor OS=Candida glabrata GN=SEC1... [more]
SEC14_YEAST1.965e-2539.44SEC14 cytosolic factor OS=Saccharomyces cerevisiae... [more]
SEC14_SCHPO5.718e-2542.42Sec14 cytosolic factor OS=Schizosaccharomyces pomb... [more]
YKJ1_YEAST2.402e-2337.97CRAL-TRIO domain-containing protein YKL091C OS=Sac... [more]
SEC14_ASHGO2.402e-2341.41SEC14 cytosolic factor OS=Ashbya gossypii GN=SEC14... [more]
RETM_ANOGA1.195e-1443.48Protein real-time OS=Anopheles gambiae GN=retm PE=... [more]
RETM_AEDAE7.746e-1441.30Protein real-time OS=Aedes aegypti GN=retm PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_G12 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937499 ID=CK937499; Name=CK937499; organism=Citrus sinensis; type=EST; length=795bp
GGGGGATCGATCGATCGATTGTTTGACCGATCCATTCATTGCTGAAAGCG
CAGAGTGTCAGTGCCGCGTTTCCCTCTCACGCGCCACCGAGAGATGTCGG
GTCCTCTCGATCGGTTCGCTAGGCCTTGTTTTGAGGGATTCTCAGGAAGT
GATGAGAGGAGAGAAAGGAAATCTGATTTTGAGAACTCTGAGGATGAAAG
GCGGACAAGGATTGGGTCTCTGAAGAAGAAAGCCTTAAATGCATCCACTA
AGTTCAAGCATTCTCTGAAGAAAAAGAGCAGTAGAAGGAAAAGTGATGGC
CGGGTCAGCTCTGTTTCAATTGAGGATGTCCGTGATGTTGAGGAGCTTCA
GGCTGTTGATGCATTTAGACAATCATTAATTATGGATGAATTGCTGCCTG
AGCGACATGATGATTATCACATGATGTTAAGGTTCTTAAAAGCTAGGAAG
TTTGATATTGACAAAGCAAAGCATATGTGGGCCGAGATGCTTCAATGGAG
GAAGGAATTCGGTGTTGACACTATTATGGAGGATTTTGAGTTCAAAGAAA
TAAATGAAGTTTTGAGTTATTACCCTCATGGTTACCATGGTGTGGACAAG
GAGGGAAGACCTGTTCACATTGAAAGATTGGGAAAAGTTGATTCTAACAA
ACTTATGCAAGTTACCACTATGGATCGATATATAAGGTATCATGTTCAAG
GATTTGAAAAAGCCTTTGCAGTAAAGTTTCCAGCTTGTACANNNGCTGCA
AAGAGGCACATTGATTCGAGCACTTCAATTTTAGATGTTCAAGGC
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