CX675320

Overview
NameCX675320
Unique NameCX675320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5626 contig Csv1_Contig5626:138..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_SPHWW (30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.176e-19
Identity = 47/82 (57.32%), Postives = 60/82 (73.17%), Query Frame = 3
Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 560
            M V IRLAR G K +P+YR++ AD+RSPRDG  +E +G YNPL  +D  KR+ L+ DR K+WLSVGAQP+D V R L  AG+
Sbjct:    1 MAVSIRLARGGAKKRPYYRIVVADARSPRDGAFIEKIGAYNPLLAKDDPKRVVLDTDRAKHWLSVGAQPTDRVARFLDAAGV 82          
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_RHIME (30S ribosomal protein S16 OS=Rhizobium meliloti GN=rpsP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.176e-19
Identity = 52/129 (40.31%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRXGGPRDTRPVDPMTGRVLEKPTNAKQIKADGMEGEA 701
            M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +RV++W++ GAQP+D V R L +AGL   P          P   +P      R  E    A++  A   E  A
Sbjct:    1 MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQHWIAQGAQPTDRVMRFLDQAGLAKRP------ARNNPTKAQPGKKAQERAAEAKQKAEEAAAAASEAAA 123          
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_ROSDO (30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.536e-19
Identity = 46/82 (56.10%), Postives = 62/82 (75.61%), Query Frame = 3
Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 560
            M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ +RV+YWL  GAQP+D V R+L  AGL
Sbjct:    1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQYWLGQGAQPTDRVARMLEAAGL 82          
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_DINSH (30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsP PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.621e-19
Identity = 55/131 (41.98%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRXGGPRDTRPVDPMTGRVLEKPTNAKQIKADGMEGEAAP 707
            M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ +RV+YWL  GA+P+D V R+L  A +LP            P+   P      R  EK   AK  +A     + AP
Sbjct:    1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQYWLGEGAKPTDRVARMLEAAEVLPKT------ERNNPKKAVPGKKAQDRAEEKA--AKAAEASEAPADEAP 123          
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_AGRVS (30S ribosomal protein S16 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rpsP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19
Identity = 50/122 (40.98%), Postives = 72/122 (59.02%), Query Frame = 3
Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRXGGPRDTRPVDPMTGRVLEKPTNAKQIKA 680
            M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE +G +NP+ G+D  KR+ LN DR+K W++ GAQP+D V + L  AGL              P   +P      R+ EK   A  + A
Sbjct:    1 MSLKIRLARGGSKKRPYYQIVIADARSPRDGRFLEKVGSWNPMLGKDNEKRVELNADRIKEWIAKGAQPTDRVLKFLAEAGL------AERAARSNPEKAKPGKRAVERLAEKKQKADALAA 116          
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_SILPO (30S ribosomal protein S16 OS=Silicibacter pomeroyi GN=rpsP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.838e-19
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 3
Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 563
            M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ +RV+YWLS GAQ +D V R+L  AG++
Sbjct:    1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQYWLSQGAQTTDRVARMLEAAGVV 83          
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_RHOS5 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.838e-19
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 3
Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 560
            M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +D   R+ +N +RV+YWLS GAQP+D V R L  AGL
Sbjct:    1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNVERVQYWLSQGAQPTDRVARFLEAAGL 82          
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_SINMW (30S ribosomal protein S16 OS=Sinorhizobium medicae (strain WSM419) GN=rpsP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.625e-19
Identity = 51/120 (42.50%), Postives = 74/120 (61.67%), Query Frame = 3
Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRXGGPRDTRPVDPMTG-RVLEKPTNAKQ 671
            M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +RV++W+  GAQP+D V R L +AGL   P             + PV  + G +  E+   AKQ
Sbjct:    1 MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQHWIDQGAQPTDRVLRFLDQAGLAKRPAR-----------SNPVKALPGKKAQERAAEAKQ 109          
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_RHOS4 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpsP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.958e-19
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 3
Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 560
            M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +D   R+ +N +RV+YWL+ GAQP+D V R L  AGL
Sbjct:    1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLAQGAQPTDRVARFLEAAGL 82          
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_RHOS1 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpsP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.958e-19
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 3
Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 560
            M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +D   R+ +N +RV+YWL+ GAQP+D V R L  AGL
Sbjct:    1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLAQGAQPTDRVARFLEAAGL 82          
The following BLAST results are available for this feature:
BLAST of CX675320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_SPHWW1.176e-1957.3230S ribosomal protein S16 OS=Sphingomonas wittichi... [more]
RS16_RHIME1.176e-1940.3130S ribosomal protein S16 OS=Rhizobium meliloti GN... [more]
RS16_ROSDO1.536e-1956.1030S ribosomal protein S16 OS=Roseobacter denitrifi... [more]
RS16_DINSH2.621e-1941.9830S ribosomal protein S16 OS=Dinoroseobacter shiba... [more]
RS16_AGRVS4.470e-1940.9830S ribosomal protein S16 OS=Agrobacterium vitis (... [more]
RS16_SILPO5.838e-1954.2230S ribosomal protein S16 OS=Silicibacter pomeroyi... [more]
RS16_RHOS55.838e-1956.1030S ribosomal protein S16 OS=Rhodobacter sphaeroid... [more]
RS16_SINMW7.625e-1942.5030S ribosomal protein S16 OS=Sinorhizobium medicae... [more]
RS16_RHOS49.958e-1954.8830S ribosomal protein S16 OS=Rhodobacter sphaeroid... [more]
RS16_RHOS19.958e-1954.8830S ribosomal protein S16 OS=Rhodobacter sphaeroid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_61D12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61D12-H23-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675320 ID=CX675320; Name=CX675320; organism=Citrus sinensis; type=EST; length=776bp
CACGCCACGACACAGCTGCGCCACGTTATAGCCGCTGATAGCCTCACGCG
TCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCAGCCCAAAA
CAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCATCTCTCCT
CTCTCAAATCAGCGTCAGTCCACAACAACCGTACCAAAGCAGCCTCAATC
GACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGCCCACGAGTCCAC
GACAACAACCTCAGCGAACCAGCCTCAGCAAAAAAAGAGCAGAGGGTATC
CAGGAAAAGAAAAGATGGTGGTGAGGATCCGATTGGCGAGATTCGGATGT
AAGAACAAACCTTTCTATCGGGTGATGGCTGCTGATAGCCGATCACCCAG
AGATGGCAAGCATCTTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTC
AAGACTGCGGCAAAAGAATGGGTCTGAATTTTGATAGAGTGAAGTATTGG
CTATCAGTTGGTGCCCAACCATCAGACCCTGTCCAGCGCATTCTTTTCAG
GGCAGGGTTACTACCCCCACCTCCTATGGTGGCAATGGGACGCANAGGTG
GACCACGTGATACACGTCCGGTCGATCCTATGACAGGACGTGTTTTGGAG
AAGCCAACCAATGCTAAGCAAATAAAAGCTGATGGTATGGAAGGAGAGGC
TGCCCCTTGAAATGTTTTAAACACTGCCTTATTTTGCAATAAAAAAATAG
TTGTTTTTCCAAAAAAAAAAAAAAAA
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