CX675320
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_SPHWW (30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsP PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.176e-19 Identity = 47/82 (57.32%), Postives = 60/82 (73.17%), Query Frame = 3 Query: 315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 560 M V IRLAR G K +P+YR++ AD+RSPRDG +E +G YNPL +D KR+ L+ DR K+WLSVGAQP+D V R L AG+ Sbjct: 1 MAVSIRLARGGAKKRPYYRIVVADARSPRDGAFIEKIGAYNPLLAKDDPKRVVLDTDRAKHWLSVGAQPTDRVARFLDAAGV 82
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_RHIME (30S ribosomal protein S16 OS=Rhizobium meliloti GN=rpsP PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.176e-19 Identity = 52/129 (40.31%), Postives = 75/129 (58.14%), Query Frame = 3 Query: 315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRXGGPRDTRPVDPMTGRVLEKPTNAKQIKADGMEGEA 701 M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE LG +NP+ +D KR+ LN +RV++W++ GAQP+D V R L +AGL P P +P R E A++ A E A Sbjct: 1 MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQHWIAQGAQPTDRVMRFLDQAGLAKRP------ARNNPTKAQPGKKAQERAAEAKQKAEEAAAAASEAAA 123
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_ROSDO (30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsP PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.536e-19 Identity = 46/82 (56.10%), Postives = 62/82 (75.61%), Query Frame = 3 Query: 315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 560 M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL +D +R+ ++ +RV+YWL GAQP+D V R+L AGL Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQYWLGQGAQPTDRVARMLEAAGL 82
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_DINSH (30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsP PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.621e-19 Identity = 55/131 (41.98%), Postives = 75/131 (57.25%), Query Frame = 3 Query: 315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRXGGPRDTRPVDPMTGRVLEKPTNAKQIKADGMEGEAAP 707 M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL +D R+ ++ +RV+YWL GA+P+D V R+L A +LP P+ P R EK AK +A + AP Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQYWLGEGAKPTDRVARMLEAAEVLPKT------ERNNPKKAVPGKKAQDRAEEKA--AKAAEASEAPADEAP 123
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_AGRVS (30S ribosomal protein S16 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rpsP PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.470e-19 Identity = 50/122 (40.98%), Postives = 72/122 (59.02%), Query Frame = 3 Query: 315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRXGGPRDTRPVDPMTGRVLEKPTNAKQIKA 680 M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE +G +NP+ G+D KR+ LN DR+K W++ GAQP+D V + L AGL P +P R+ EK A + A Sbjct: 1 MSLKIRLARGGSKKRPYYQIVIADARSPRDGRFLEKVGSWNPMLGKDNEKRVELNADRIKEWIAKGAQPTDRVLKFLAEAGL------AERAARSNPEKAKPGKRAVERLAEKKQKADALAA 116
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_SILPO (30S ribosomal protein S16 OS=Silicibacter pomeroyi GN=rpsP PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.838e-19 Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 3 Query: 315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 563 M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL +D +R+ ++ +RV+YWLS GAQ +D V R+L AG++ Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQYWLSQGAQTTDRVARMLEAAGVV 83
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_RHOS5 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsP PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.838e-19 Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 3 Query: 315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 560 M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL +D R+ +N +RV+YWLS GAQP+D V R L AGL Sbjct: 1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNVERVQYWLSQGAQPTDRVARFLEAAGL 82
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_SINMW (30S ribosomal protein S16 OS=Sinorhizobium medicae (strain WSM419) GN=rpsP PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.625e-19 Identity = 51/120 (42.50%), Postives = 74/120 (61.67%), Query Frame = 3 Query: 315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRXGGPRDTRPVDPMTG-RVLEKPTNAKQ 671 M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE LG +NP+ +D KR+ LN +RV++W+ GAQP+D V R L +AGL P + PV + G + E+ AKQ Sbjct: 1 MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQHWIDQGAQPTDRVLRFLDQAGLAKRPAR-----------SNPVKALPGKKAQERAAEAKQ 109
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_RHOS4 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpsP PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.958e-19 Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 3 Query: 315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 560 M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL +D R+ +N +RV+YWL+ GAQP+D V R L AGL Sbjct: 1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLAQGAQPTDRVARFLEAAGL 82
BLAST of CX675320 vs. ExPASy Swiss-Prot
Match: RS16_RHOS1 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpsP PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.958e-19 Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 3 Query: 315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 560 M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL +D R+ +N +RV+YWL+ GAQP+D V R L AGL Sbjct: 1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLAQGAQPTDRVARFLEAAGL 82 The following BLAST results are available for this feature:
BLAST of CX675320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675320 ID=CX675320; Name=CX675320; organism=Citrus sinensis; type=EST; length=776bpback to top |